Input parameters:

  Query = FBpp0077060 (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077060, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSTAGKRKEIYKYLAPWPLYSMNWSVRPDKRFRLALGSFIEEYNNKVQIISLDEDTSEFSAKSTFDHPYPTTKIMWIPD 80  
WD40-rpts                                                           (_____________________WD 1_

Query       81 SKGVYPDLLATSGDYLRVWRAGEPDTRLECVLNNNKNSDFCAPLTSFDWNEVDPNLVGTSSIDTTCTIWGLETGQPHARV 160 
WD40-rpts      ___________________)            (________________WD 2________________)          

Query      161 YVAGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPAHTALLRLAWNKQDPNYLATV 240 
WD40-rpts         (__________________WD 3__________________)      (_________________WD 4_______

Query      241 AMDSCEVIILDVRVPCTPVARLSNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILAYTAAEGEVNQI 320 
WD40-rpts      __________)    (_________________WD 5_________________)        (________________

Query      321 QWGATQPDWIAICYNKACEILRV 343 
WD40-rpts      _WD 6________________) 

6 WD40-repeats found in QUERY=FBpp0077060 (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    54-100      4.22  289.13  0.00788       17.5%     33.57
  WD 2:  Seg 10   113-150      5.54  343.60  0.00146       20.0%     45.14
  WD 3:  Seg 14   164-205      6.76  393.94  0.00031       27.5%     52.68
  WD 4:  Seg 18   212-251      3.94  277.29  0.01136       15.0%     50.25
  WD 5:  Seg 21   256-295      6.51  383.65  0.00042       20.0%     50.27
  WD 6:  Seg 25   304-342      4.17  286.99  0.00842        2.5%     45.41

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   54-100    DEDTSEFSAKSTFDHPYPTTKIMWIP-DS---K-GVYPDLLATSGDY-LRVWR
   WD 2  113-150    NNN-------KNSDFCAPLTSFDWNEVDP---N-LVGT---SSIDTT-CTIWG
   WD 3  164-205    -GH----VKTQLIAHDKEVYDIAFSR-AGGGRD-MFAS---VGADGS-VRMFD
   WD 4  212-251    -ST----IIYEDPAHTALLRLAWNKQ-DP---N-YLAT---VAMDSCEVIILD
   WD 5  256-295    -CT----PVARLSNHRACVNGIAWAP-HS---SCHICT---AGDDHQ-ALIWD
   WD 6  304-342    -ED----PILAYTAAEGEVNQIQWGA-TQ---P-DWIA---ICYNKA-CEILR

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSP-DG---K-RLVS---GSEDGT-IKVWD