Input parameters:

  Query = FBpp0077430 (Len=395)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077430, Len=395):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSIRLNDDAMRQFRVAKVFPETKHHTLAMEFSSDGLRLLVCDHSALSIFSSTRQVQVCKVPMHHYLPDVACFVQQDTRVL 80  
WD40-rpts                  (________________WD 1________________)   (__________________WD 2____

Query       81 HSTSKHDYTIRCLDLNTRHCVRVFGGHAKTINRLASQPGGENVFISAGRDDQVYMWDIRVKTHTHRIKNLRRPLCAFDPE 160 
WD40-rpts      _____________)   (_________________WD 3_________________)   (________________WD 

Query      161 GLFLATSSGTEGIQIRDVRMMGGEPSRKFVYQVNAKANWTQLQFAPNGKSLLLSTDHSWCFSVSAIDGTYQQSFTGYSNK 240 
WD40-rpts      4_______________)        (_________________WD 5________________)   (____________

Query      241 LRLPLDATYTPDSQFILSGADKGRIHIWRAADGFPVAVLKGNNMGPVRCMRFNPRATMFVSSDSRIVFWMPMANGVYDWV 320 
WD40-rpts      ______WD 6__________________)   (________________WD 7________________)  (_______

Query      321 KRLKPGETISFTDETVQEEAVKAPRTIPMPKPKIETVWKIKRLNRKRACTGDEIVDLTNALHNNDSMEDGEIAED 395 
WD40-rpts      __________WD 8________________)                                            

8 WD40-repeats found in QUERY=FBpp0077430 (Len=395):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-50       6.60  387.39  0.00037       15.0%     52.51
  WD 2:  Seg  6    54-94       6.64  388.90  0.00036       17.5%     51.16
  WD 3:  Seg 10    98-137      8.62  470.89  2.8e-05       25.0%     56.02
  WD 4:  Seg 14   141-177      6.66  389.66  0.00035       17.5%     53.49
  WD 5:  Seg 18   186-224      7.56  426.93  0.00011       15.0%     53.06
  WD 6:  Seg 22   228-269      8.34  459.20  4.0e-05       22.5%     56.41
  WD 7:  Seg 26   273-310      5.99  362.10  0.00082       30.0%     51.60
  WD 8:  Seg 30   313-351      6.99  403.23  0.00023       10.0%     41.87

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-50     FRVAKVFPETKHH-TL---AMEFSSDGLR-L--LVCD-HSALSIFS
   WD 2   54-94     QVQVCKVPMHHYL-PD---VACFVQQDTR-VLHSTSKHDYTIRCLD
   WD 3   98-137    RHCVRVFGGHAKT-IN---RLASQPGGENVF--ISAGRDDQVYMWD
   WD 4  141-177    KTHTHRIKNLRRP-L-----CAFDPEGLF-L--ATSSGTEGIQIRD
   WD 5  186-224    SRKFVYQVNAKAN-WT---QLQFAPNGKS-L--LLSTDHSWCFSVS
   WD 6  228-269    GTYQQSFTGYSNK-LRLPLDATYTPDSQF-I--LSGADKGRIHIWR
   WD 7  273-310    GFPVAVLKGNNMGPVR---CMRFNPRATM-F--VSS--DSRIVFWM
   WD 8  313-351    ANGVYDWVKRLKP-GE---TISFTDETVQ-E--EAVKAPRTIPMPK

   WD40 Template    GECLRTLSGHTSG-VT---SVSFSPDGKR-L--VSGSEDGTIKVWD