Input parameters:

  Query = FBpp0077507 (Len=867)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077507, Len=867):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGNTHGLSWFPHFPDKFVSWGQEIHLYEVRRKDDHSQKSRLPYISVNYLANESRYQYARCVAASYHSDQPIIAVGLADG 80  
WD40-rpts                                                         (_______________WD 1_________

Query       81 KVGICNFRDTYDSSWEYTPRQQRMCTCLAWNELDANILAIGHDRHRNDTCITIWDIERGVPKETANFFGVGESANSICWD 160 
WD40-rpts      _____)     (___________________WD 2___________________)     (_________________WD

Query      161 RNHRTVIAGMSQKMIKLFDLRQSNATCQSIQTKTVQGLSVSPNGNYLCSYVDSVITLWDPRNIKSPLRQIQSSKNHLQIA 240 
WD40-rpts       3________________)(_________________WD 4_________________)   (_________________

Query      241 WCPTRTSLLSSLQRDSSYITLYDIRSVDTDNSGEIYHVKRQISPFPARYQHSGKFSFVNCLSWHSRDFERALLLADALNI 320 
WD40-rpts      _WD 5_________________)                                                         

Query      321 LDFRLPATLHTAHSNRRKLPLLMQRPLYTPASPTSTAATPTQQQPTSSCSTNSGSSLDFSTPGGSPFNVDLLKPELFELD 400 
WD40-rpts                                                                                      

Query      401 LVDETRQRALEDYGIKPDNKRFGELHLTPYLRNVWSTLNNVYSEDRLTGLKATLGINLGHTSEALMASSRIESQVLQWPE 480 
WD40-rpts                                                                                      

Query      481 GINNSNKLICYRSEQRDLALQLCGWAFEQELDRFIDQLYANKEYSRAAMICVFHLKIFHACNILSSAADNMRDPSMYRIT 560 
WD40-rpts                                                                                      

Query      561 VIALSSFNADRCSSTWRNQRSSANMQIHDPHLRAVFSFLTMEKDNFDAVLKEEGVSLSDRMAFACKYLSETKLADYVAQQ 640 
WD40-rpts                                                                                      

Query      641 IQAAIDGGDLNGLLLTGESQDGIDILQSYMDTSFDVQTVALVAINYFRQELFEDKRIQYWIASYLDHLNSWGLWEKRAEL 720 
WD40-rpts                                                                                      

Query      721 DIKIESIRPSSRSSRTVFLSCNFCGKSVSNALLDEPRPRSTTTSTNRLSSCPSCRKPLPRCSLCLMHMGTMVNMSNGETP 800 
WD40-rpts                                                                                      

Query      801 TTTPDVPGWQTKPFSKWFSWCQTCRHGGHTEHIMQWFKQNSECPVSSCNCRCFDMDGTKPNTLRDIS 867 
WD40-rpts                                                                         

5 WD40-repeats found in QUERY=FBpp0077507 (Len=867):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    52-86       4.33  293.52  0.00688       12.5%     43.69
  WD 2:  Seg  8    92-135      4.09  283.55  0.00936       20.0%     42.24
  WD 3:  Seg 11   141-179      6.31  375.12  0.00055       15.0%     51.72
  WD 4:  Seg 15   180-219      5.52  342.60  0.00150       35.0%     43.50
  WD 5:  Seg 18   223-263      3.70  267.39  0.01541       12.5%     42.07

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   52-86     -----NE-SRYQYARCVAASYHS-DQPIIAVGL--A----DGKVGICN
   WD 2   92-135    -DSSWEY-TPRQQRMCTCLAWNELDANILAIGH--DRHRNDTCITIWD
   WD 3  141-179    -PKETAN-FFGVGESANSICWDR-NHRTVIAGM--S----QKMIKLFD
   WD 4  180-219    LRQSNATCQSIQTKTVQGLSVSP-NGNYLCS-Y--V----DSVITLWD
   WD 5  223-263    -IKSPLR-QIQSSKNHLQIAWCP-TRTSLLSSLQRD----SSYITLYD

   WD40 Template    TGECLRT-LSGHTSGVTSVSFSP-DGKRLVSGS--E----DGTIKVWD