Input parameters:

  Query = FBpp0077715 (Len=700)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077715, Len=700):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESHISQSNINGALVPPAALLTILQKGLLYTEVEWSVGEDGEVARPIEGLS 80  
WD40-rpts                                                                                      

Query       81 LIDAVMPEVKPLKPIVKTEPGKPGAVDSSAPAGGNQNNNAKPEIKIEPGTGVAGSAGGNKIAGSTTGTSTPTDQSASEVD 160 
WD40-rpts           (________________________________WD 1_______________________________)    (_

Query      161 SSGNAANNAGGTYAGNNGAGGNQASTGGSNSTSTPAGGDLAAPGASQKKSQNSNEAGSSSSGNAGNANATSTDDAASSTS 240 
WD40-rpts      _________________WD 2_________________)   (_________________WD 3________________

Query      241 TNGNSSTSSSVEQPTSGLTPAGGTVSTSNPDAAASGGASTATGSKAPSGAVTIRVGAQGNNVQSGSSNAQSSAPSGTISS 320 
WD40-rpts      )(_________________________WD 4_________________________)                       

Query      321 STSGGAGTPAALVPMDIDENIEIPESKARVLRGHESEVFICAWNPSRDLLASGSGDSTARIWDMSDANTNSNQLVLRHCI 400 
WD40-rpts                          (___________________WD 5__________________)                (

Query      401 QKGGAEVPSNKDVTSLDWNCDGSLLATGSYDGYARIWKTDGRLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDA 480 
WD40-rpts      _________________WD 6________________)  (_________________WD 7________________) 

Query      481 STGQCTQQFAFHSAPALDVDWQTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKI 560 
WD40-rpts        (________________WD 8________________)   (_________________WD 9_______________

Query      561 WSMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIHTLTKHTEPVYSVAFSPDGK 640 
WD40-rpts      _)   (_____________________WD10_____________________)   (_________________WD11__

Query      641 HLASGSFDKCVHIWSTQTGQLVHSYKGTGGIFEVCWNSKGTKVGASASDGSVFVLDLRKF 700 
WD40-rpts      ______________)   (________________WD12________________)    

12 WD40-repeats found in QUERY=FBpp0077715 (Len=700):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    86-154      3.41  255.32  0.02234       12.5%      2.32
  WD 2:  Seg  5   159-199      4.87  315.88  0.00344       12.5%     36.69
  WD 3:  Seg  8   203-241      7.85  439.04  7.5e-05       12.5%     42.06
  WD 4:  Seg 11   242-297      5.46  340.17  0.00162       25.0%     30.79
  WD 5:  Seg 18   341-383      9.32  499.66  1.1e-05       37.5%     39.94
  WD 6:  Seg 21   400-438      8.43  462.81  3.6e-05       27.5%     42.36
  WD 7:  Seg 24   441-479      9.43  504.03  1.0e-05       25.0%     52.15
  WD 8:  Seg 28   483-520      7.30  416.02  0.00015       22.5%     54.18
  WD 9:  Seg 32   524-562     10.28  539.43  3.3e-06       37.5%     56.52
  WD10:  Seg 36   566-613      8.18  452.45  5.0e-05       32.5%     49.74
  WD11:  Seg 40   617-655     10.91  565.16  1.5e-06       52.5%     55.40
  WD12:  Seg 44   659-696      7.56  427.08  0.00011       22.5%     56.72

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   86-154    MP------------EVKPLKPIVKTEPGKPGAVDSSAPAGGNQNNNAKPEIKIEPGTGVAGSAGGNK---------IAGSTTGT----STPTDQ
   WD 2  159-199    -V------------DSS-----------------------------GNAANNAGGTYAGNNGAGGNQ---------ASTGGSNS--TSTPAGGD
   WD 3  203-241    -P------------GAS-----------------------------QKKSQNSNEAGSSSSGNAGNA---------NATSTDDA----ASSTST
   WD 4  242-297    NGNSSTSSSVEQPTSGL-----------------------------TPAGGTVSTSNPDAAASGGAS---------TATGSKAPSGAVTIRVGA
   WD 5  341-383    IE---------IPESKA-----------------------------RVLRGHESEVFICAWNPSRDL---------LASGSGDS----TARIWD
   WD 6  400-438    -I------------QKG-----------------------------GAEVPSNKDVTSLDWNCDGSL---------LATGSYDG----YARIWK
   WD 7  441-479    -G------------RLA-----------------------------STLGQHKGPIFALKWNKCGNY---------ILSAGVDK----TTIIWD
   WD 8  483-520    -G------------QCT-----------------------------QQFAFHSAPALDVDWQTNQ-A---------FASCSTDQ----RIHVCR
   WD 9  524-562    -N------------EPI-----------------------------KTFKGHTNEVNAIKWCPQGQL---------LASCSDDM----TLKIWS
   WD10  566-613    -D------------RCC-----------------------------HDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDS----TVRLWD
   WD11  617-655    -G------------SCI-----------------------------HTLTKHTEPVYSVAFSPDGKH---------LASGSFDK----CVHIWS
   WD12  659-696    -G------------QLV-----------------------------HSYKGT-GGIFEVCWNSKGTK---------VGASASDG----SVFVLD

   WD40 Template    TG------------ECL-----------------------------RTLSGHTSGVTSVSFSPDGKR---------LVSGSEDG----TIKVWD