Input parameters:

  Query = FBpp0077778 (Len=347)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077778, Len=347):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGTKRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQLEGHEGEIFTAEFHPEGELLLSSGFDRQIY 80  
WD40-rpts      (________________WD 1_______________)       (_________________WD 2______________

Query       81 IWQVYEDCENVMAMSGHSGAVMEAHFTPDGSHIFTCSTDKTLAFWDIATGQRQRRFKGHGNFVNSVQGSRRGQQLLCSGS 160 
WD40-rpts      __)    (_________________WD 3________________)   (_________________WD 4_________

Query      161 DDRTIKIWDARKKHAAHTLESPFQVTAVCFGDTGEQVISGGIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFIL 240 
WD40-rpts      ________)   (________________WD 5________________)   (_________________WD 6_____

Query      241 TNAMDNTLRVWDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYIWDVNTRRILYKLPGHNGSVN 320 
WD40-rpts      ___________)       (___________________WD 7__________________)   (______________

Query      321 AVDFSPKEPLILSGSSDKTLYLGEIDE 347 
WD40-rpts      ___WD 8________________)   

8 WD40-repeats found in QUERY=FBpp0077778 (Len=347):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       3.87  274.45  0.01240       15.0%     25.90
  WD 2:  Seg  4    45-83       9.01  487.01  1.7e-05       27.5%     50.73
  WD 3:  Seg  8    88-126      9.99  527.21  4.9e-06       35.0%     56.82
  WD 4:  Seg 12   130-169      9.18  493.68  1.4e-05       47.5%     56.50
  WD 5:  Seg 16   173-210      8.41  462.02  3.7e-05       32.5%     55.56
  WD 6:  Seg 20   214-252     10.17  534.86  3.8e-06       35.0%     52.23
  WD 7:  Seg 24   260-302      8.20  453.26  4.8e-05       27.5%     57.79
  WD 8:  Seg 28   306-344      9.60  511.24  8.0e-06       35.0%     53.54

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     -------MGTK----RPNNSVILAQEAKRSKNDLM-AYTNRDKALLESG
   WD 2   45-83     QAPIMQLEGHE----GEIFTAEFHPEGEL-----L-LSSGFDRQIYIWQ
   WD 3   88-126    CENVMAMSGHS----GAVMEAHFTPDGSH-----I-FTCSTDKTLAFWD
   WD 4  130-169    GQRQRRFKGHG----NFVNSVQGSRRGQQ-----LLCSGSDDRTIKIWD
   WD 5  173-210    KHAAHTLESPF----Q-VTAVCFGDTGEQ-----V-ISGGIDNEVKIWD
   WD 6  214-252    QAVLHHLRGHS----DTITGMSLSPEGDF-----I-LTNAMDNTLRVWD
   WD 7  260-302    ERCVKVFQGHQHNFEKNLLRCAWSPGSDK-----I-TSGSADRHVYIWD
   WD 8  306-344    RRILYKLPGHN----GSVNAVDFSPKEPL-----I-LSGSSDKTLYLGE

   WD40 Template    GECLRTLSGHT----SGVTSVSFSPDGKR-----L-VSGSEDGTIKVWD