Input parameters:

  Query = FBpp0077824 (Len=1153)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077824, Len=1153):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLKFIRGKGQQPSADRQRYITAQHGFPHKPSALAYDPVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLL 80  
WD40-rpts                      (_________________WD 1________________)        (________________

Query       81 EWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTFTIKEPVIY 160 
WD40-rpts      _WD 2________________)    (__________________WD 3__________________)            

Query      161 HDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWDFESASVQRAYIAPGHGQSVGLTVNFEGSEFTWYHA 240 
WD40-rpts      (____________________WD 4___________________)(___________________WD 5___________

Query      241 DGSYATWSIDNPEPPSNVNYVPYGPDPCKSINRLYKGKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFTSKV 320 
WD40-rpts      _______)                                                                        

Query      321 IDFFVTFENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNYLASEVVQSVYESILRAGDEQDIDYS 400 
WD40-rpts                                                                             (________

Query      401 NISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKFWDCTGVLLKPIYNFKTSSIFGSESDFRDDAAADMSAEQV 480 
WD40-rpts      _______________WD 6_______________________)                                     

Query      481 DEGEPPFRKSGLFDPYSDDPRLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDRDGFVWKGHDQ 560 
WD40-rpts                                                                                      

Query      561 LNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVSGGTAHGLVLFDFKNFVPVFHRCTLNPNDLTGAG 640 
WD40-rpts                                                                                      

Query      641 EQLSRRKSFKKSLRESFRKLRKGRSTRTNQSNQVPTTLEARPVERQIEARCADDGLGSMVRCLLFAKTYVTNVNITSPTL 720 
WD40-rpts                                                                                      

Query      721 WSATNASTVSVFLLHLPPAQTAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGISIFDQAGSPVDQLNAGENGS 800 
WD40-rpts                                                                                      

Query      801 PPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCRISPETLQSMHGCSPTKSTRSHGDGEADPNISG 880 
WD40-rpts                                                                                      

Query      881 SLAVSRGDVYNETALICLTNMGDIMVLSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRIALATSRVV 960 
WD40-rpts                                                                                      

Query      961 QPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRPAEENVGRNSVQQVNGVNISNSPNQANE 1040
WD40-rpts                                                                                      

Query     1041 TISSSIGDITVDSVRDHLNMTTTTLCSINTEETIGRLSVLSTQTNKASTTVNMSEIPNINISNLEDLESKRNTTETSTSS 1120
WD40-rpts                                                                                      

Query     1121 VVIKSIITNISHEKTNGDNKIGTPKTAPEESQF 1153
WD40-rpts                                       

6 WD40-repeats found in QUERY=FBpp0077824 (Len=1153):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-55       5.03  322.39  0.00281       17.5%     41.45
  WD 2:  Seg  4    64-102      4.25  290.41  0.00757       15.0%     49.87
  WD 3:  Seg  8   107-148      5.26  331.86  0.00210       32.5%     52.24
  WD 4:  Seg 13   161-205      3.79  271.40  0.01362       17.5%     47.20
  WD 5:  Seg 16   206-248      4.82  313.90  0.00366       10.0%     55.47
  WD 6:  Seg 28   392-443      4.10  283.98  0.00924       27.5%     24.59

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-55     -QRY---I------------T----AQ--HGFPHKPSALAYDP-VLKLMAIGTQTGALKVFG
   WD 2   64-102    -QHT---L------------L----NN--SASELNVQLLEWVY-GTGRILSLTAANQLILWE
   WD 3  107-148    TLLP---I------------K----TLPFDGKLKKVSSLCCSL-SKDLLWIGTEGGNIYQLD
   WD 4  161-205    HDVV---L------------EQVPPAY--KLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWD
   WD 5  206-248    FESASVQR------------A----YI--APGHGQSVGLTVNF-EGSEFTWYHADGSYATWS
   WD 6  392-443    GDEQ---DIDYSNISWPITGG----TL--PDNLEESVEEDATK-LYEILLTGHEDGSVKFWD

   WD40 Template    TGEC---L------------R----TL--SGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD