Input parameters:
Query = FBpp0077825 (Len=1112)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0077825, Len=1112):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLK 80
WD40-rpts (_____________________WD 1_____________________) (___________
Query 81 KVSSLCCSLSKDLLWIGTEGGNIYQLDLHTFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLC 160
WD40-rpts ______WD 2________________) (__________________WD 3______________
Query 161 VLWDFESASVQRAYIAPGHGQSVGLTVNFEGSEFTWYHADGSYATWSIDNPEPPSNVNYVPYGPDPCKSINRLYKGKRRS 240
WD40-rpts ___)(___________________WD 4__________________)
Query 241 NDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFTSKVIDFFVTFENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAP 320
WD40-rpts
Query 321 YLHSVHASAVTCNYLASEVVQSVYESILRAGDEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKF 400
WD40-rpts (_______________________WD 5______________________
Query 401 WDCTGVLLKPIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSGLFDPYSDDPRLAVKKIAFCPKTGQLIVGGT 480
WD40-rpts _)
Query 481 AGQIVIADFIDLPEKVSLKYISMNLVSDRDGFVWKGHDQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEA 560
WD40-rpts
Query 561 SWGLVSGGTAHGLVLFDFKNFVPVFHRCTLNPNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRSTRTNQSNQVPTTLEAR 640
WD40-rpts
Query 641 PVERQIEARCADDGLGSMVRCLLFAKTYVTNVNITSPTLWSATNASTVSVFLLHLPPAQTAATAVPSASGNAPPHMPRRI 720
WD40-rpts
Query 721 SAQLAKEIQLKHRAPVVGISIFDQAGSPVDQLNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIH 800
WD40-rpts
Query 801 FGSFSCRISPETLQSMHGCSPTKSTRSHGDGEADPNISGSLAVSRGDVYNETALICLTNMGDIMVLSVPELKRQLNAAAV 880
WD40-rpts
Query 881 RREDINGVSSLCFTNSGEALYMMSSSELQRIALATSRVVQPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYEI 960
WD40-rpts
Query 961 KNPSGISICTRPAEENVGRNSVQQVNGVNISNSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTEETIGRLSVLS 1040
WD40-rpts
Query 1041 TQTNKASTTVNMSEIPNINISNLEDLESKRNTTETSTSSVVIKSIITNISHEKTNGDNKIGTPKTAPEESQF 1112
WD40-rpts
5 WD40-repeats found in QUERY=FBpp0077825 (Len=1112):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 14-61 4.01 280.37 0.01033 15.0% 48.47
WD 2: Seg 8 69-107 4.87 315.89 0.00344 27.5% 48.77
WD 3: Seg 12 124-164 5.12 325.95 0.00252 15.0% 41.85
WD 4: Seg 15 165-207 4.85 315.03 0.00353 10.0% 54.84
WD 5: Seg 27 351-402 3.99 279.67 0.01055 27.5% 24.79
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 14-61 GQPG---V------------ELYGQHTLLNNSASELNVQLLEWVY-GTGRILSLTAANQLILWE
WD 2 69-107 PIKT---L-------------PFDGKL--------KKVSSLCCSL-SKDLLWIGTEGGNIYQLD
WD 3 124-164 LEQV---P------------PAYKLNP--------GAIESIRQLPNSPSKLLVAYNRGLCVLWD
WD 4 165-207 FESASVQR------------AYIAPGH--------GQSVGLTVNF-EGSEFTWYHADGSYATWS
WD 5 351-402 GDEQ---DIDYSNISWPITGGTLPDNL--------EESVEEDATK-LYEILLTGHEDGSVKFWD
WD40 Template TGEC---L------------RTLSGHT--------SGVTSVSFSP-DGKRLVSGSEDGTIKVWD