Input parameters:

  Query = FBpp0077827 (Len=1112)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077827, Len=1112):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLK 80  
WD40-rpts                   (_____________________WD 1_____________________)       (___________

Query       81 KVSSLCCSLSKDLLWIGTEGGNIYQLDLHTFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLC 160 
WD40-rpts      ______WD 2________________)                (__________________WD 3______________

Query      161 VLWDFESASVQRAYIAPGHGQSVGLTVNFEGSEFTWYHADGSYATWSIDNPEPPSNVNYVPYGPDPCKSINRLYKGKRRS 240 
WD40-rpts      ___)(___________________WD 4__________________)                                 

Query      241 NDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFTSKVIDFFVTFENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAP 320 
WD40-rpts                                                                                      

Query      321 YLHSVHASAVTCNYLASEVVQSVYESILRAGDEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKF 400 
WD40-rpts                                    (_______________________WD 5______________________

Query      401 WDCTGVLLKPIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSGLFDPYSDDPRLAVKKIAFCPKTGQLIVGGT 480 
WD40-rpts      _)                                                                              

Query      481 AGQIVIADFIDLPEKVSLKYISMNLVSDRDGFVWKGHDQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEA 560 
WD40-rpts                                                                                      

Query      561 SWGLVSGGTAHGLVLFDFKNFVPVFHRCTLNPNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRSTRTNQSNQVPTTLEAR 640 
WD40-rpts                                                                                      

Query      641 PVERQIEARCADDGLGSMVRCLLFAKTYVTNVNITSPTLWSATNASTVSVFLLHLPPAQTAATAVPSASGNAPPHMPRRI 720 
WD40-rpts                                                                                      

Query      721 SAQLAKEIQLKHRAPVVGISIFDQAGSPVDQLNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIH 800 
WD40-rpts                                                                                      

Query      801 FGSFSCRISPETLQSMHGCSPTKSTRSHGDGEADPNISGSLAVSRGDVYNETALICLTNMGDIMVLSVPELKRQLNAAAV 880 
WD40-rpts                                                                                      

Query      881 RREDINGVSSLCFTNSGEALYMMSSSELQRIALATSRVVQPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYEI 960 
WD40-rpts                                                                                      

Query      961 KNPSGISICTRPAEENVGRNSVQQVNGVNISNSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTEETIGRLSVLS 1040
WD40-rpts                                                                                      

Query     1041 TQTNKASTTVNMSEIPNINISNLEDLESKRNTTETSTSSVVIKSIITNISHEKTNGDNKIGTPKTAPEESQF 1112
WD40-rpts                                                                              

5 WD40-repeats found in QUERY=FBpp0077827 (Len=1112):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    14-61       4.01  280.37  0.01033       15.0%     48.47
  WD 2:  Seg  8    69-107      4.87  315.89  0.00344       27.5%     48.77
  WD 3:  Seg 12   124-164      5.12  325.95  0.00252       15.0%     41.85
  WD 4:  Seg 15   165-207      4.85  315.03  0.00353       10.0%     54.84
  WD 5:  Seg 27   351-402      3.99  279.67  0.01055       27.5%     24.79

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-61     GQPG---V------------ELYGQHTLLNNSASELNVQLLEWVY-GTGRILSLTAANQLILWE
   WD 2   69-107    PIKT---L-------------PFDGKL--------KKVSSLCCSL-SKDLLWIGTEGGNIYQLD
   WD 3  124-164    LEQV---P------------PAYKLNP--------GAIESIRQLPNSPSKLLVAYNRGLCVLWD
   WD 4  165-207    FESASVQR------------AYIAPGH--------GQSVGLTVNF-EGSEFTWYHADGSYATWS
   WD 5  351-402    GDEQ---DIDYSNISWPITGGTLPDNL--------EESVEEDATK-LYEILLTGHEDGSVKFWD

   WD40 Template    TGEC---L------------RTLSGHT--------SGVTSVSFSP-DGKRLVSGSEDGTIKVWD