Input parameters:

  Query = FBpp0077828 (Len=1161)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077828, Len=1161):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLKFIRGKGQQPSADRHRLQKDLFAYRKTAQHGFPHKPSALAYDPVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSA 80  
WD40-rpts                       (____________________WD 1____________________)        (________

Query       81 SELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTF 160 
WD40-rpts      _________WD 2________________)    (__________________WD 3__________________)    

Query      161 TIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWDFESASVQRAYIAPGHGQSVGLTVNFEG 240 
WD40-rpts              (____________________WD 4___________________)(___________________WD 5___

Query      241 SEFTWYHADGSYATWSIDNPEPPSNVNYVPYGPDPCKSINRLYKGKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKV 320 
WD40-rpts      _______________)                                                                

Query      321 CLDFTSKVIDFFVTFENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNYLASEVVQSVYESILRAG 400 
WD40-rpts                                                                                     (

Query      401 DEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKFWDCTGVLLKPIYNFKTSSIFGSESDFRDDAA 480 
WD40-rpts      _______________________WD 6_______________________)                             

Query      481 ADMSAEQVDEGEPPFRKSGLFDPYSDDPRLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDRDG 560 
WD40-rpts                                                                                      

Query      561 FVWKGHDQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVSGGTAHGLVLFDFKNFVPVFHRCTLN 640 
WD40-rpts                                                                                      

Query      641 PNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRSTRTNQSNQVPTTLEARPVERQIEARCADDGLGSMVRCLLFAKTYVTN 720 
WD40-rpts                                                                                      

Query      721 VNITSPTLWSATNASTVSVFLLHLPPAQTAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGISIFDQAGSPVDQ 800 
WD40-rpts                                                                                      

Query      801 LNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCRISPETLQSMHGCSPTKSTRSHGDG 880 
WD40-rpts                                                                                      

Query      881 EADPNISGSLAVSRGDVYNETALICLTNMGDIMVLSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRI 960 
WD40-rpts                                                                                      

Query      961 ALATSRVVQPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRPAEENVGRNSVQQVNGVNIS 1040
WD40-rpts                                                                                      

Query     1041 NSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTEETIGRLSVLSTQTNKASTTVNMSEIPNINISNLEDLESKRN 1120
WD40-rpts                                                                                      

Query     1121 TTETSTSSVVIKSIITNISHEKTNGDNKIGTPKTAPEESQF 1161
WD40-rpts                                               

6 WD40-repeats found in QUERY=FBpp0077828 (Len=1161):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    18-63       4.54  302.35  0.00523       17.5%     41.89
  WD 2:  Seg  4    72-110      4.25  290.30  0.00760       15.0%     50.23
  WD 3:  Seg  8   115-156      5.35  335.52  0.00187       32.5%     51.59
  WD 4:  Seg 13   169-213      3.87  274.65  0.01232       17.5%     46.62
  WD 5:  Seg 16   214-256      4.93  318.33  0.00319       10.0%     57.38
  WD 6:  Seg 28   400-451      4.40  296.57  0.00626       27.5%     24.27

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   18-63     RLQKDLFAYR---K------------T----AQ--HGFPHKPSALAYDP-VLKLMAIGTQTGALKVFG
   WD 2   72-110    -QH------T---L------------L----NN--SASELNVQLLEWVY-GTGRILSLTAANQLILWE
   WD 3  115-156    TLL------P---I------------K----TLPFDGKLKKVSSLCCSL-SKDLLWIGTEGGNIYQLD
   WD 4  169-213    HDV------V---L------------EQVPPAY--KLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWD
   WD 5  214-256    FES------ASVQR------------A----YI--APGHGQSVGLTVNF-EGSEFTWYHADGSYATWS
   WD 6  400-451    GDE------Q---DIDYSNISWPITGG----TL--PDNLEESVEEDATK-LYEILLTGHEDGSVKFWD

   WD40 Template    TGE------C---L------------R----TL--SGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD