Input parameters:
Query = FBpp0077829 (Len=1161)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0077829, Len=1161):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLKFIRGKGQQPSADRHRLQKDLFAYRKTAQHGFPHKPSALAYDPVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSA 80
WD40-rpts (____________________WD 1____________________) (________
Query 81 SELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTF 160
WD40-rpts _________WD 2________________) (__________________WD 3__________________)
Query 161 TIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWDFESASVQRAYIAPGHGQSVGLTVNFEG 240
WD40-rpts (____________________WD 4___________________)(___________________WD 5___
Query 241 SEFTWYHADGSYATWSIDNPEPPSNVNYVPYGPDPCKSINRLYKGKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKV 320
WD40-rpts _______________)
Query 321 CLDFTSKVIDFFVTFENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNYLASEVVQSVYESILRAG 400
WD40-rpts (
Query 401 DEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKFWDCTGVLLKPIYNFKTSSIFGSESDFRDDAA 480
WD40-rpts _______________________WD 6_______________________)
Query 481 ADMSAEQVDEGEPPFRKSGLFDPYSDDPRLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDRDG 560
WD40-rpts
Query 561 FVWKGHDQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVSGGTAHGLVLFDFKNFVPVFHRCTLN 640
WD40-rpts
Query 641 PNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRSTRTNQSNQVPTTLEARPVERQIEARCADDGLGSMVRCLLFAKTYVTN 720
WD40-rpts
Query 721 VNITSPTLWSATNASTVSVFLLHLPPAQTAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGISIFDQAGSPVDQ 800
WD40-rpts
Query 801 LNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCRISPETLQSMHGCSPTKSTRSHGDG 880
WD40-rpts
Query 881 EADPNISGSLAVSRGDVYNETALICLTNMGDIMVLSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRI 960
WD40-rpts
Query 961 ALATSRVVQPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRPAEENVGRNSVQQVNGVNIS 1040
WD40-rpts
Query 1041 NSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTEETIGRLSVLSTQTNKASTTVNMSEIPNINISNLEDLESKRN 1120
WD40-rpts
Query 1121 TTETSTSSVVIKSIITNISHEKTNGDNKIGTPKTAPEESQF 1161
WD40-rpts
6 WD40-repeats found in QUERY=FBpp0077829 (Len=1161):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 18-63 4.54 302.35 0.00523 17.5% 41.89
WD 2: Seg 4 72-110 4.25 290.30 0.00760 15.0% 50.23
WD 3: Seg 8 115-156 5.35 335.52 0.00187 32.5% 51.59
WD 4: Seg 13 169-213 3.87 274.65 0.01232 17.5% 46.62
WD 5: Seg 16 214-256 4.93 318.33 0.00319 10.0% 57.38
WD 6: Seg 28 400-451 4.40 296.57 0.00626 27.5% 24.27
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 18-63 RLQKDLFAYR---K------------T----AQ--HGFPHKPSALAYDP-VLKLMAIGTQTGALKVFG
WD 2 72-110 -QH------T---L------------L----NN--SASELNVQLLEWVY-GTGRILSLTAANQLILWE
WD 3 115-156 TLL------P---I------------K----TLPFDGKLKKVSSLCCSL-SKDLLWIGTEGGNIYQLD
WD 4 169-213 HDV------V---L------------EQVPPAY--KLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWD
WD 5 214-256 FES------ASVQR------------A----YI--APGHGQSVGLTVNF-EGSEFTWYHADGSYATWS
WD 6 400-451 GDE------Q---DIDYSNISWPITGG----TL--PDNLEESVEEDATK-LYEILLTGHEDGSVKFWD
WD40 Template TGE------C---L------------R----TL--SGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD