Input parameters:

  Query = FBpp0077900 (Len=489)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077900, Len=489):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLELLESFGQNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVIWDFLTRGIAKIISAHVHPVCSLSWTRNGHK 80  
WD40-rpts                (__________________WD 1__________________)   (_________________WD 2___

Query       81 LLSASTDNNVCIWDVLTGELEHKYRFPSPVLKVQFDPRNDNRLLVCPMRYAAVLVEVGGTHRCLPLDSDGDLNIVASFDR 160 
WD40-rpts      _____________)(___________________WD 3__________________)(__________________WD 4

Query      161 RGKHIYTGNAKGKILVLDVETFEVVASFRIIVGTSSATAVKSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEP 240 
WD40-rpts      _________________)(_____________________WD 5____________________)(______________

Query      241 IQKLQDLVNKTTWKKCCFSGDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSGLVSIW 320 
WD40-rpts      __________WD 6________________________)   (_________________WD 7________________

Query      321 AQNQVENWSAFAPDFKELDENVEYEERESEFDIADEDKSVDLNADAQQDEEIEVDVQKVEPVAAFCSSDEEGEDENALQF 400 
WD40-rpts      )      (________________WD 8_______________)                                    

Query      401 LPMAPEVEDPEDGWTGQDGLEPSAVMLGHMEPHDYEDDIMASKRRRMQLYDVSLPDAPTDETHPLISSKASKDKQQPVGG 480 
WD40-rpts                                                                                      

Query      481 KKAAGRTKK 489 
WD40-rpts               

8 WD40-repeats found in QUERY=FBpp0077900 (Len=489):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-52       7.62  429.44  0.00010       27.5%     46.61
  WD 2:  Seg  5    56-94       9.70  515.16  7.1e-06       30.0%     53.93
  WD 3:  Seg  9    95-137      5.16  327.98  0.00236       25.0%     49.31
  WD 4:  Seg 13   138-178      8.23  454.60  4.6e-05       27.5%     55.77
  WD 5:  Seg 17   179-225      7.66  431.18  9.6e-05       20.0%     48.06
  WD 6:  Seg 21   226-279      5.70  350.22  0.00119       20.0%     49.44
  WD 7:  Seg 25   283-321      6.27  373.81  0.00057       22.5%     54.15
  WD 8:  Seg 29   328-364      6.01  363.05  0.00080        7.5%     39.43

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-52     -Q-N-------YP-------------EEFDGSLDCISL-AVTCAFNK--YGTLLAVGC-NDGRIVIWD
   WD 2   56-94     -R-G-------IA-------------KIISAHV---HP-VCSLSWTR--NGHKLLSAS-TDNNVCIWD
   WD 3   95-137    VL-T------GEL-------------EHKYRFP---SP-VLKVQFDPRNDNRLLVCPM-RYAAVLVEV
   WD 4  138-178    GGTH-------RC-------------LPLDSDG---DL-NIVASFDR--RGKHIYTGN-AKGKILVLD
   WD 5  179-225    VE-TFEVVASFRI-------------IVGTSSA---TA-VKSIEFAR--RGDAFLINT-SDRVIRVYD
   WD 6  226-279    SK-E-------IITLGKDGEPEPIQKLQDLVNK---TT-WKKCCFSG--DGEYICAGSARQHALYIWE
   WD 7  283-321    -G-N-------LV-------------KILHGTK---GELLLDVVWHP--VRPIIASIS--SGLVSIWA
   WD 8  328-364    -----------WS-------------AFAPDFK---EL-DENVEYEE--RESEFDIAD-EDKSVDLNA

   WD40 Template    TG-E-------CL-------------RTLSGHT---SG-VTSVSFSP--DGKRLVSGS-EDGTIKVWD