Input parameters:
Query = FBpp0078015 (Len=630)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0078015, Len=630):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQSTSSTSSGSCSRPLEGSTLNSGGSAENVARDGGSGDDSVGIGDENPSGSSAATNGHDSKHNGFIVNNNGSSSRIVDGE 80
WD40-rpts
Query 81 NNRENTSCSGVQLDKSNQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLEPLID 160
WD40-rpts
Query 161 NGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQHNITRVHQLSSYMMCSTNQDLYQRAKWEGKGILSRAL 240
WD40-rpts
Query 241 VMERLQTFMPPSVMMSPRRLRTLLQQAVELQSQHCPCHDMAWETNLETVSLLTDHCCTTDGFPMQTIQILTDHCDEVWFC 320
WD40-rpts (________________
Query 321 KFSPDGLKLATGSKDSTVIIWDVDPYKLTLKHRRVLDGQAQLSVSFVSWSPDSKLILVGGTEDSHELYIWNVDDGKLVVK 400
WD40-rpts _WD 1________________) (__________________WD 2__________________)(________
Query 401 FSQSLEDSLACGAFSRDGARFVCGGQKGQLYLCDLNGTIVDSWEGVRVNSIAFRADNKTILAADNHYRIRGYNFDSPRSD 480
WD40-rpts ___________WD 3__________________) (________________WD 4_______________) (___
Query 481 FDILREPHPIMTFSINSADRLALLNVSNQGLHLWDIEDKCLVRRFQGIRQSNFAIHSCFGGVNESFVASGSEDKVVYIWH 560
WD40-rpts ______________WD 5________________) (__________________WD 6__________________)
Query 561 IKREEPLAKLAGHTKTVNCVSWNPVYPSLLASASDDATVRIWGPKPNGSSATTESDDCSSSSSSSSWNMT 630
WD40-rpts (_________________WD 7_________________)
7 WD40-repeats found in QUERY=FBpp0078015 (Len=630):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 304-342 10.03 528.86 4.6e-06 37.5% 54.09
WD 2: Seg 8 350-391 6.59 387.00 0.00038 30.0% 48.95
WD 3: Seg 12 392-434 7.63 429.79 0.00010 22.5% 52.55
WD 4: Seg 16 437-473 6.64 388.95 0.00036 20.0% 53.98
WD 5: Seg 20 477-515 7.36 418.75 0.00014 7.5% 56.04
WD 6: Seg 24 519-560 7.03 405.08 0.00022 22.5% 56.67
WD 7: Seg 28 564-603 8.53 467.00 3.2e-05 40.0% 51.24
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 304-342 -MQ---TIQILTDHCD-E---VWFCKFSPD-GLKLATGSKDS--TVIIWD
WD 2 350-391 -LK---HRRVLDGQAQLS---VSFVSWSPD-SKLILVGGTEDSHELYIWN
WD 3 392-434 VDDGKLVVKFSQSLED-S---LACGAFSRD-GARFVCGGQKG--QLYLCD
WD 4 437-473 -GT---IVDSWEGVR------VNSIAFRAD-NKTILAADNHY--RIRGYN
WD 5 477-515 -PR---SDFDILREPH-P---IMTFSINSA-DRLALLNVSNQ--GLHLWD
WD 6 519-560 -KC---LVRRFQGIRQ-SNFAIHSCFGGVN-ESFVASGSEDK--VVYIWH
WD 7 564-603 -EE---PLAKLAGHTK-T---VNCVSWNPVYPSLLASASDDA--TVRIWG
WD40 Template TGE---CLRTLSGHTS-G---VTSVSFSPD-GKRLVSGSEDG--TIKVWD