Input parameters:

  Query = FBpp0078019 (Len=630)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0078019, Len=630):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQSTSSTSSGSCSRPLEGSTLNSGGSAENVARDGGSGDDSVGIGDENPSGSSAATNGHDSKHNGFIVNNNGSSSRIVDGE 80  
WD40-rpts                                                                                      

Query       81 NNRENTSCSGVQLDKSNQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLEPLID 160 
WD40-rpts                                                                                      

Query      161 NGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQHNITRVHQLSSYMMCSTNQDLYQRAKWEGKGILSRAL 240 
WD40-rpts                                                                                      

Query      241 VMERLQTFMPPSVMMSPRRLRTLLQQAVELQSQHCPCHDMAWETNLETVSLLTDHCCTTDGFPMQTIQILTDHCDEVWFC 320 
WD40-rpts                                                                     (________________

Query      321 KFSPDGLKLATGSKDSTVIIWDVDPYKLTLKHRRVLDGQAQLSVSFVSWSPDSKLILVGGTEDSHELYIWNVDDGKLVVK 400 
WD40-rpts      _WD 1________________)       (__________________WD 2__________________)(________

Query      401 FSQSLEDSLACGAFSRDGARFVCGGQKGQLYLCDLNGTIVDSWEGVRVNSIAFRADNKTILAADNHYRIRGYNFDSPRSD 480 
WD40-rpts      ___________WD 3__________________)  (________________WD 4_______________)   (___

Query      481 FDILREPHPIMTFSINSADRLALLNVSNQGLHLWDIEDKCLVRRFQGIRQSNFAIHSCFGGVNESFVASGSEDKVVYIWH 560 
WD40-rpts      ______________WD 5________________)   (__________________WD 6__________________)

Query      561 IKREEPLAKLAGHTKTVNCVSWNPVYPSLLASASDDATVRIWGPKPNGSSATTESDDCSSSSSSSSWNMT 630 
WD40-rpts         (_________________WD 7_________________)                           

7 WD40-repeats found in QUERY=FBpp0078019 (Len=630):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   304-342     10.03  528.86  4.6e-06       37.5%     54.09
  WD 2:  Seg  8   350-391      6.59  387.00  0.00038       30.0%     48.95
  WD 3:  Seg 12   392-434      7.63  429.79  0.00010       22.5%     52.55
  WD 4:  Seg 16   437-473      6.64  388.95  0.00036       20.0%     53.98
  WD 5:  Seg 20   477-515      7.36  418.75  0.00014        7.5%     56.04
  WD 6:  Seg 24   519-560      7.03  405.08  0.00022       22.5%     56.67
  WD 7:  Seg 28   564-603      8.53  467.00  3.2e-05       40.0%     51.24

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  304-342    -MQ---TIQILTDHCD-E---VWFCKFSPD-GLKLATGSKDS--TVIIWD
   WD 2  350-391    -LK---HRRVLDGQAQLS---VSFVSWSPD-SKLILVGGTEDSHELYIWN
   WD 3  392-434    VDDGKLVVKFSQSLED-S---LACGAFSRD-GARFVCGGQKG--QLYLCD
   WD 4  437-473    -GT---IVDSWEGVR------VNSIAFRAD-NKTILAADNHY--RIRGYN
   WD 5  477-515    -PR---SDFDILREPH-P---IMTFSINSA-DRLALLNVSNQ--GLHLWD
   WD 6  519-560    -KC---LVRRFQGIRQ-SNFAIHSCFGGVN-ESFVASGSEDK--VVYIWH
   WD 7  564-603    -EE---PLAKLAGHTK-T---VNCVSWNPVYPSLLASASDDA--TVRIWG

   WD40 Template    TGE---CLRTLSGHTS-G---VTSVSFSPD-GKRLVSGSEDG--TIKVWD