Input parameters:
Query = FBpp0078095 (Len=638)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0078095, Len=638):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSICFSSNGRYFAYSNGQEVKVLQASRDSAASWP 80
WD40-rpts (____________________WD 1____________________)
Query 81 VICVLPRPKAFYLQFSPRGSYLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSADESIFALVVGG 160
WD40-rpts (_________________WD 2_________________) (________________WD 3___________
Query 161 EALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPFLAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRV 240
WD40-rpts _____)(________________________WD 4_______________________)
Query 241 EMLWNKRGSGLLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPKATEFVVVYGFMPSKAALYNL 320
WD40-rpts (__________________WD 5_________________)
Query 321 KCDVVFDFGEGPRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRIS 400
WD40-rpts (_________________WD 6_________________
Query 401 NGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGIKSSQPEASKKAYTPPHLRLLKEGKNPEKYL 480
WD40-rpts )
Query 481 PQPSIPGLAPTAAAGGVNGNKRNNKNKQRSARKDVNVVNGGDADSAPTEVVDQAAPVARQSPVFVAAEERKPQHTPRQKY 560
WD40-rpts
Query 561 QPDNAADQPPNSYGQGHPNGQHISDKERKIRSVAKKLSDIKKLKVRRSQGENLELNQLNKIKMEAQYLDELKALKQSA 638
WD40-rpts
6 WD40-repeats found in QUERY=FBpp0078095 (Len=638):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 25-70 3.07 241.36 0.03425 17.5% 39.90
WD 2: Seg 7 86-125 2.81 230.92 0.04706 7.5% 26.23
WD 3: Seg 10 129-166 2.86 232.61 0.04469 15.0% 41.07
WD 4: Seg 13 167-219 2.78 229.43 0.04922 20.0% 30.97
WD 5: Seg 22 279-319 3.92 276.75 0.01155 17.5% 49.44
WD 6: Seg 29 362-401 4.02 280.53 0.01028 10.0% 44.57
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 25-70 SAG--------SKQPFEHKPHLPREETKSSRSICFSSNGRY--FA-----YSN-GQEVKVLQ
WD 2 86-125 PRP--------KAFYLQ-------FSPRGSYLCTWEHYAIT--KD-----RPEGSPNLLVYE
WD 3 129-166 -GV--------EVFAIV-------QKNQADWQPSWSADESI--FA-----LVV-GGEALFYD
WD 4 167-219 LGEGAEKGFATTSRKIG-------GSRGGMLSLGPGNCPPF--LAFYTPGAKGAPSMCKLYK
WD 5 279-319 -GD--------TCSVPL-------SKEGPVHCVKWSPKATEFVVV-----YGFMPSKAALYN
WD 6 362-401 VSK--------REKLAN-------LKCADTTVFEWHPNGEW--FV-----TATTAPRLRISN
WD40 Template TGE--------CLRTLS-------GHTSGVTSVSFSPDGKR--LV-----SGSEDGTIKVWD