Input parameters:

  Query = FBpp0078362 (Len=807)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0078362, Len=807):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDVSQPPPQLLTAPSALATNFTSLPPPNMGGQHYRHYHPHHGSNKHGYNQFKPFMPGGFQRPFGMSQDDFDGKRLRKSVM 80  
WD40-rpts                                                                                      

Query       81 RKTVDYNASIIKALENRLYQRDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTATNKMRCPIFTLAWTPEGRR 160 
WD40-rpts                                                     (_____________________WD 1_______

Query      161 LVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMYQAHKEAIRGISFSPT 240 
WD40-rpts      _____________)   (_________________WD 2________________)(__________________WD 3_

Query      241 DSKFVSGSDDGTLRIWDFMRCQEERVLRGHGADVKCVHWHPQKGMIVSGSKDNQQPIKIWDPKSGIALATLHAHKSTVMD 320 
WD40-rpts      ________________)   (__________________WD 4_________________)   (_______________

Query      321 LKWNDNGNWLVTASRDHLLKLFDIRNLREEVQVFRGHKKEASSVSWHPIHEGLFCSGGSDGSILFWNVGTDKEIGCVETA 400 
WD40-rpts      __WD 5________________)    (_________________WD 6_________________)(____________

Query      401 HDSIVWTLAWHPLGHILCSGSNDHTIKFWTRNRPGDLMRDKYNLNTLPASLAALDECEYDDAIIPGMGPEDRVEFTESLT 480 
WD40-rpts      _______WD 7__________________)                                     (____________

Query      481 ADKGFIPGLDLDPSKAINDRDREKKVPYSKPIPRNFQVNWAGPRRADDPSVLSIHEELAAREAKDTTNGLNHQQISENTM 560 
WD40-rpts      ______WD 8_________________)                                                    

Query      561 EGILASGMLNGLDPQTIVGVLVYNRFIRVHPDSRLMAAIRQGAEFLNKYIDAGKLEELNDVVPVRDRSRSVSPTVEARGE 640 
WD40-rpts                                                                                      

Query      641 MVSPPTKKSRFEPRQHNAQLVCVRELMQCKKPFLQSLVAAKAQQPNTEFVDEPPLEQRDRDREREGDRDRERERARERER 720 
WD40-rpts                                                                                      

Query      721 DQSGGRPNPWASNAPWSNNGNPGGNGNGSNGFSNNGAESFNDRDRGGGGQRRRRGINNSGPGNGGGSGGGGGGGSGRNRG 800 
WD40-rpts                                                                                      

Query      801 RNNNRRY 807 
WD40-rpts             

8 WD40-repeats found in QUERY=FBpp0078362 (Len=807):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   128-174      7.53  425.87  0.00011       22.5%     41.63
  WD 2:  Seg  8   178-216      8.12  449.90  5.4e-05       22.5%     55.61
  WD 3:  Seg 12   217-257      9.75  517.35  6.6e-06       35.0%     53.70
  WD 4:  Seg 16   261-301      8.31  457.99  4.2e-05       40.0%     55.10
  WD 5:  Seg 20   305-343      9.19  494.14  1.4e-05       35.0%     55.03
  WD 6:  Seg 24   348-387      7.58  427.73  0.00011       35.0%     52.31
  WD 7:  Seg 28   388-430      8.46  463.96  3.5e-05       40.0%     51.98
  WD 8:  Seg 34   468-508      3.90  275.71  0.01193       15.0%     21.08

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  128-174    NP----SNAVTTRFVKTATNKMRCPIFTLAWTPEGRRL-VTGASSG--EFTLWN
   WD 2  178-216    -F----NFETI-------LQAHDISVRTMVWSHNDSWM-VTGDHGG--YVKYWQ
   WD 3  217-257    SN---MNNVKM-------YQAHKEAIRGISFSPTDSKF-VSGSDDG--TLRIWD
   WD 4  261-301    -C----QEERV-------LRGHGADVKCVHWHPQKGMI-VSGSKDNQQPIKIWD
   WD 5  305-343    -G----IALAT-------LHAHKSTVMDLKWNDNGNWL-VTASRDH--LLKLFD
   WD 6  348-387    -R----EEVQV-------FRGHKKEASSVSWHPIHEGLFCSGGSDG--SILFWN
   WD 7  388-430    VG-TDKEIGCV-------ETAHDSIVWTLAWHPLGHIL-CSGSNDH--TIKFWT
   WD 8  468-508    GPEDRVEFTES-------LTADKGFIPGLDLDPS---K-AINDRDR--EKKVPY

   WD40 Template    TG----ECLRT-------LSGHTSGVTSVSFSPDGKRL-VSGSEDG--TIKVWD