Input parameters:
Query = FBpp0078363 (Len=807)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0078363, Len=807):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDVSQPPPQLLTAPSALATNFTSLPPPNMGGQHYRHYHPHHGSNKHGYNQFKPFMPGGFQRPFGMSQDDFDGKRLRKSVM 80
WD40-rpts
Query 81 RKTVDYNASIIKALENRLYQRDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTATNKMRCPIFTLAWTPEGRR 160
WD40-rpts (_____________________WD 1_______
Query 161 LVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMYQAHKEAIRGISFSPT 240
WD40-rpts _____________) (_________________WD 2________________)(__________________WD 3_
Query 241 DSKFVSGSDDGTLRIWDFMRCQEERVLRGHGADVKCVHWHPQKGMIVSGSKDNQQPIKIWDPKSGIALATLHAHKSTVMD 320
WD40-rpts ________________) (__________________WD 4_________________) (_______________
Query 321 LKWNDNGNWLVTASRDHLLKLFDIRNLREEVQVFRGHKKEASSVSWHPIHEGLFCSGGSDGSILFWNVGTDKEIGCVETA 400
WD40-rpts __WD 5________________) (_________________WD 6_________________)(____________
Query 401 HDSIVWTLAWHPLGHILCSGSNDHTIKFWTRNRPGDLMRDKYNLNTLPASLAALDECEYDDAIIPGMGPEDRVEFTESLT 480
WD40-rpts _______WD 7__________________) (____________
Query 481 ADKGFIPGLDLDPSKAINDRDREKKVPYSKPIPRNFQVNWAGPRRADDPSVLSIHEELAAREAKDTTNGLNHQQISENTM 560
WD40-rpts ______WD 8_________________)
Query 561 EGILASGMLNGLDPQTIVGVLVYNRFIRVHPDSRLMAAIRQGAEFLNKYIDAGKLEELNDVVPVRDRSRSVSPTVEARGE 640
WD40-rpts
Query 641 MVSPPTKKSRFEPRQHNAQLVCVRELMQCKKPFLQSLVAAKAQQPNTEFVDEPPLEQRDRDREREGDRDRERERARERER 720
WD40-rpts
Query 721 DQSGGRPNPWASNAPWSNNGNPGGNGNGSNGFSNNGAESFNDRDRGGGGQRRRRGINNSGPGNGGGSGGGGGGGSGRNRG 800
WD40-rpts
Query 801 RNNNRRY 807
WD40-rpts
8 WD40-repeats found in QUERY=FBpp0078363 (Len=807):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 128-174 7.53 425.87 0.00011 22.5% 41.63
WD 2: Seg 8 178-216 8.12 449.90 5.4e-05 22.5% 55.61
WD 3: Seg 12 217-257 9.75 517.35 6.6e-06 35.0% 53.70
WD 4: Seg 16 261-301 8.31 457.99 4.2e-05 40.0% 55.10
WD 5: Seg 20 305-343 9.19 494.14 1.4e-05 35.0% 55.03
WD 6: Seg 24 348-387 7.58 427.73 0.00011 35.0% 52.31
WD 7: Seg 28 388-430 8.46 463.96 3.5e-05 40.0% 51.98
WD 8: Seg 34 468-508 3.90 275.71 0.01193 15.0% 21.08
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 128-174 NP----SNAVTTRFVKTATNKMRCPIFTLAWTPEGRRL-VTGASSG--EFTLWN
WD 2 178-216 -F----NFETI-------LQAHDISVRTMVWSHNDSWM-VTGDHGG--YVKYWQ
WD 3 217-257 SN---MNNVKM-------YQAHKEAIRGISFSPTDSKF-VSGSDDG--TLRIWD
WD 4 261-301 -C----QEERV-------LRGHGADVKCVHWHPQKGMI-VSGSKDNQQPIKIWD
WD 5 305-343 -G----IALAT-------LHAHKSTVMDLKWNDNGNWL-VTASRDH--LLKLFD
WD 6 348-387 -R----EEVQV-------FRGHKKEASSVSWHPIHEGLFCSGGSDG--SILFWN
WD 7 388-430 VG-TDKEIGCV-------ETAHDSIVWTLAWHPLGHIL-CSGSNDH--TIKFWT
WD 8 468-508 GPEDRVEFTES-------LTADKGFIPGLDLDPS---K-AINDRDR--EKKVPY
WD40 Template TG----ECLRT-------LSGHTSGVTSVSFSPDGKRL-VSGSEDG--TIKVWD