Input parameters:

  Query = FBpp0078689 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0078689, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTAKIWD 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 VEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDE 160 
WD40-rpts         (___________________WD 3__________________)          (_________________WD 4__

Query      161 TIITGHDNGNIAIWDIRKGQKVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAAIS 240 
WD40-rpts      ______________)     (________________WD 5________________)   (________________WD

Query      241 PIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGKSYASGGEDGFVRVQTFDSTY 320 
WD40-rpts       6________________)                 (_________________WD 7________________)     

Query      321 FENIFE 326 
WD40-rpts            

7 WD40-repeats found in QUERY=FBpp0078689 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.70  474.00  2.5e-05       27.5%     50.80
  WD 2:  Seg  5    42-80      10.20  535.90  3.7e-06       35.0%     56.92
  WD 3:  Seg  9    84-126      5.45  339.61  0.00165       17.5%     55.09
  WD 4:  Seg 13   137-175      8.52  466.57  3.2e-05       25.0%     55.50
  WD 5:  Seg 17   181-218      9.23  496.02  1.3e-05       27.5%     48.50
  WD 6:  Seg 20   222-259      6.82  396.52  0.00028       25.0%     55.32
  WD 7:  Seg 25   277-315     10.05  529.74  4.5e-06       40.0%     54.02

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MRPL--MLQGHERSITQIKYNREGDLLFSCSKDQ-----KPNVWY
   WD 2   42-80     -GERLGTYDGHQGAVWCLDVDWESRKLITGAGDM-----TAKIWD
   WD 3   84-126    -GTVIASIPTKSS-VRTSNFSFSGNQAAYSTDKAMGQSCELFLID
   WD 4  137-175    -QEPTLRIPMTESKITSMLWGPLDETIITGHDNG-----NIAIWD
   WD 5  181-218    --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDT-----TAKLFD
   WD 6  222-259    -LMCLKTYKTERP-VNSAAISPIMDHVVLGGGQD-----AMEVTT
   WD 7  277-315    -EEEFARLKGHFGPINSLAFHPDGKSYASGGEDG-----FVRVQT

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDG-----TIKVWD