Input parameters:

  Query = FBpp0078841 (Len=543)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0078841, Len=543):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIENSFKMEMHFKNRWQAASLFLRYPRTVTLCLSGKSGDMDESVNLSTSMGDVEASMLNHNVSFSSTMVTSNGDLSLPKL 80  
WD40-rpts      (_____________________WD 1_____________________)                                

Query       81 SVTLSAEEILKLRSGRPKNAVESPHAGVPMETSLAAEEEANGDEEEESVRVVDIEDTLELTSNGNEAKPEDQELAIAPVL 160 
WD40-rpts      (________________________WD 2_______________________)                           

Query      161 QYFQGALVELGRRCWTSSTEAQHYTKGCYWSPDGTCLLVPVHLDGMHVIEMPSDLYSADTVQPARSLTKLQSEVHVPEGG 240 
WD40-rpts                 (_________________WD 3________________)                          (___

Query      241 TVYDCVWYPHMNSLQPETCLWLATRQHEPIHMWDAFDGSLRCSYSGYDAVDEVMAAISLAFSHDGEQIYAGYKRCIKIFD 320 
WD40-rpts      _____________WD 4________________)   (___________________WD 5__________________)

Query      321 TSRPGRFCDDYPVKFAISCIAQTTAHPHTLTCGNWHGYIQHFDLRCSHKQGPLFTLGGHKGGITQLRYGEFGNGEWHLFS 400 
WD40-rpts           (________________WD 6________________)      (___________________WD 7_______

Query      401 GARKCDKILQWDMRNYKQPLVELQRHVDTNQRIQFDLASDSNWLASGDTRGFVNVWDLKKYGDPSVLPLHSDCCNGVALN 480 
WD40-rpts      ___________)    (__________________WD 8_________________)   (________________WD 

Query      481 PAMPILATSSGQFHFTDQSAQGDNVTLNGTETTELPAPADVNQNQKEVLYENAVVMWWCGQTG 543 
WD40-rpts      9_______________)   (_________________WD10________________)    

10 WD40-repeats found in QUERY=FBpp0078841 (Len=543):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-48       4.83  314.19  0.00363       20.0%     18.34
  WD 2:  Seg  5    81-133      4.77  311.70  0.00392       12.5%      9.61
  WD 3:  Seg  9   172-210      6.44  380.55  0.00046       17.5%     49.84
  WD 4:  Seg 14   237-274      6.26  373.42  0.00058       15.0%     21.91
  WD 5:  Seg 17   278-320      6.45  381.08  0.00046       30.0%     53.11
  WD 6:  Seg 21   326-363      5.93  359.48  0.00089       12.5%     47.71
  WD 7:  Seg 24   370-412      7.07  406.72  0.00021       27.5%     51.64
  WD 8:  Seg 28   417-457      7.59  428.19  0.00011       30.0%     54.00
  WD 9:  Seg 32   461-497      5.85  356.19  0.00099       20.0%     46.99
  WD10:  Seg 36   501-539      4.62  305.56  0.00474       12.5%     44.96

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-48     MIENS-------------FKMEMHFK-----NRWQAASLFLRYPRTVTL--CL-SGK----------SGDMDESVNLST
   WD 2   81-133    SVTLSAEEILKLRSGRPKNAVESPHA-----G-----------VPMETS--LA-A-------EEEANGDEEEESVRVVD
   WD 3  172-210    -RRCW-------------TSSTEAQH-----Y-----------TKGCYW--SP-DGT----C---LLVPVHLDGMHVIE
   WD 4  237-274    --PEG-------------GTVYDCVW-----Y-----------PHMNSL--QP-ETC----L---WLATRQHEPIHMWD
   WD 5  278-320    -GSLR-------------CSYSGYDAVDEVMA-----------AISLAF--SH-DGE----Q---IYAGY-KRCIKIFD
   WD 6  326-363    ---RF-------------CDDYPVKF-----A-----------ISCIAQ--TTAHPH----T---LTCGNWHGYIQHFD
   WD 7  370-412    -QGPL-------------FTLGGHKG-----G-----------ITQLRY--GE-FGNGEWHL---FSGARKCDKILQWD
   WD 8  417-457    -KQPL-------------VELQRHVD-----T-----------NQRIQFDLAS-DSN----W---LASGDTRGFVNVWD
   WD 9  461-497    -YGDP-------------SVLPLHSD-----C-----------CNGVAL--NP-AMP----I---LATSS--GQFHFTD
   WD10  501-539    -QGDN-------------VTLNGTET-----T-----------ELPAPA--DV-NQN----Q---KEVLYENAVVMWWC

   WD40 Template    TGECL-------------RTLSGHTS-----G-----------VTSVSF--SP-DGK----R---LVSGSEDGTIKVWD