Input parameters:

  Query = FBpp0078842 (Len=445)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0078842, Len=445):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAHTRRPSDGLLARVNFPLYAVDMLTSRHILVAGGGGSSKTGVANGFEIYELYHNGSHFCAEEVLRHETGANVVMNFAVR 80  
WD40-rpts      (___________________WD 1___________________)                (_________________WD

Query       81 NGGRRGYLCAGQEAHCQMYYVQPRVQSEEDGNGNGVGVGDGKPAPEERPHENGNVRQRNAHSGVEPVANGHRPPLSTADI 160 
WD40-rpts       2_________________)  (________________WD 3_______________)                     

Query      161 LRQFRRLHFDIQAADVIQTDFLKGAEPLQRVVRISGNGRLMATGGTDGKLRVWTFPQMTLAAELAAHSKEIDDLDFSPDS 240 
WD40-rpts                (___________________WD 4___________________)   (_________________WD 5_

Query      241 KLIASISKDAQGLVWDLASGQLQHKLQWKTPEGAKYLFKRCRYGTVEAQKDNYRLFTIANPLGKVGKQRGFLQHWDCASG 320 
WD40-rpts      _______________)   (_________________WD 6________________)                  (___

Query      321 QLRQAVAIDESLSSLAVRDDGRFVAVGTMFSGSVSMYIAFSLQRVLHIPHAHSMFVTGLQFLPITNEEGPPISSDTEAAV 400 
WD40-rpts      _______________WD 7__________________)    (_______________________WD 8__________

Query      401 LSISVDNKVCIHSLSQRRTIPAWIAIVFLIVMIFAVFVLCSYIGI 445 
WD40-rpts      ____________)                                

8 WD40-repeats found in QUERY=FBpp0078842 (Len=445):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       4.86  315.34  0.00350       15.0%     24.66
  WD 2:  Seg  5    61-100      5.77  353.14  0.00108       10.0%     49.42
  WD 3:  Seg  9   103-139      5.21  329.95  0.00222        5.0%     16.25
  WD 4:  Seg 15   171-214      8.29  457.01  4.3e-05       25.0%     48.95
  WD 5:  Seg 19   218-256      9.61  511.81  7.9e-06       32.5%     52.33
  WD 6:  Seg 23   260-298      6.15  368.74  0.00067       15.0%     49.22
  WD 7:  Seg 28   317-358      6.69  391.18  0.00033       17.5%     56.42
  WD 8:  Seg 32   363-413      6.09  366.27  0.00072       22.5%     50.38

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MAH-T----RRPSDGLLARVNFPLYAVDMLTSRHI------------LVAGGG-GSSKTGVA
   WD 2   61-100    -AE-E----VL----RHETGANVVMNFAVRNGGRR-----------GYLCAGQ-EAHCQMYY
   WD 3  103-139    PRV-Q----SE----EDGNG---NGVGVGDGKPAP------------EERPHE-NGNVRQRN
   WD 4  171-214    IQA-ADVIQTD----FLKGAEPLQRVVRISGNGRL------------MATGGT-DGKLRVWT
   WD 5  218-256    -MT-L----AA----ELAAHSKEIDDLDFSPDSKL------------IASISK-DAQGLVWD
   WD 6  260-298    -GQ-L----QH----KLQWKTPEGAKYLFKRCRYG------------TVEAQK-DNYRLFTI
   WD 7  317-358    CASGQ----LR----QAVAIDESLSSLAVRDDGRF------------VAVGTMFSGSVSMYI
   WD 8  363-413    -QR-V----LH----IPHAHSMFVTGLQFLPITNEEGPPISSDTEAAVLSISV-DNKVCIHS

   WD40 Template    TGE-C----LR----TLSGHTSGVTSVSFSPDGKR------------LVSGSE-DGTIKVWD