Input parameters:

  Query = FBpp0078846 (Len=656)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0078846, Len=656):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVTFKKARLGKERLVEQSEEEERDEGSSGQDLFGWWALPEPALLMIFERLSVPDLLRASRCCVRWHSIAKDDLLWRHKF 80  
WD40-rpts                                                                                      

Query       81 QEHFKASPSIPLKPGSESWRAEYKRLSMHIPFVQAQRLEPTVENNHGHTHQVLHVSFAHNGEMFATCSKDGYVIIWNAQH 160 
WD40-rpts                                          (__________________WD 1_________________)   

Query      161 PCSEKYAHNMKQFSWKYSQYSQFNQSDTLLLVSGVHFGSPQSTSGEIAVFYLGATESHLRCRVVNRPYDIFGTWFSDQYL 240 
WD40-rpts                                                                                      

Query      241 ISGDLHWLAHLVSTSVLWLNKANQEIDSEHVPIMSQLYKFYNRNASSVRAIMVARCPWLDESNDPLATTADQESHSSVLS 320 
WD40-rpts                                                                                      

Query      321 PPTGDQGSTSQASGNPVSHAASILRTRSSTPEENYLPDISERRSRARLGDATIHYLDEYRTAVATTNESNDDDDEEYDSM 400 
WD40-rpts                                                                                      

Query      401 DVQEEYDEMENSIPKYLIFSTGSTTFTPHQIGFKRIRNVFFPKKLDPGPSLKERIAAKRAAEQQQQQTPRTDPDWWDYES 480 
WD40-rpts                                                                                      

Query      481 VKDRFDKVDKVIDLHGHIIGMALSPDHRYLYVNTRPWPKNYVITNPLEPPPIAQEIDIHVIDLMTLKRVGNMLRAHKAYT 560 
WD40-rpts               (________________________WD 2_______________________)    (_____________

Query      561 PSAECFFIFLDVCEEYVASGAEDQHAYLWDRYYGISLAKFKHSDVVNSVAFNPRDSEMLVTTSDDYTIKVWRSRAKAKEF 640 
WD40-rpts      ______WD 3___________________)(__________________WD 4__________________)        

Query      641 NIPINVSESFELKPKN 656 
WD40-rpts                      

4 WD40-repeats found in QUERY=FBpp0078846 (Len=656):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   117-157      9.34  500.31  1.1e-05       32.5%     38.05
  WD 2:  Seg 20   490-542      4.19  287.66  0.00824       17.5%     47.11
  WD 3:  Seg 23   547-590      6.25  372.76  0.00059       22.5%     31.78
  WD 4:  Seg 27   591-632      7.59  428.11  0.00011       40.0%     51.55

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  117-157    RLE-PTVENNH-GHTHQVLH-----VSFAH-NGEMFATCS-------------------KDGYVIIWN
   WD 2  490-542    --------KVI-DLHGHIIG-----MALSP-DHRYLYVNTRPWPKNYVITNPLEPPPIAQEIDIHVID
   WD 3  547-590    ---KRVGNMLR-AHKAYTPSAECFFIFLDV-CEEYVASGA-------------------EDQHAYLWD
   WD 4  591-632    RYY--GISLAKFKHSDVVNS-----VAFNPRDSEMLVTTS-------------------DDYTIKVWR

   WD40 Template    TGE--CLRTLS-GHTSGVTS-----VSFSP-DGKRLVSGS-------------------EDGTIKVWD