Input parameters:

  Query = FBpp0078949 (Len=483)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0078949, Len=483):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVEMSVCDSPNKNSKLDKKSLTPFKKVRRKNWKQEAAYKSDTSKGQEVSYVGERFIPNRFERENIEFNLKYIGKRKERD 80  
WD40-rpts                                                                                      

Query       81 ILETGVTLTASYWRQSGFISNINRTFGIGERRLFQFSSQQGTRSRVVDNDSADSDWPCNPRARPYAIQNATHEMPGICSP 160 
WD40-rpts                                                                                      

Query      161 VDYNMMDWSSGGMVAMSSGQDVMLWRNLDESTMVFSVESPTSLKYSPDGKHLAIGCMDRNYPVLDLWEVRSPTEFLVSYR 240 
WD40-rpts                                (__________________WD 1__________________)          (_

Query      241 KLFFKSMGYISCIEWSHDGKEVICGTQCGVIIVLAMPTLNTLMQLREHRHTVKKMKFAPTHKYFASSDTDGKIFIFDAVL 320 
WD40-rpts      _______________WD 2_______________)   (_________________WD 3________________)   

Query      321 KVRLLKLDGRSIVFDWHPWTGEDLAVAERSPASIFIFNIPRRQFVASYRRRDDRIVIKTLTYSKITGELLVNVIRRDDAD 400 
WD40-rpts      (________________WD 4________________)   (_____________________WD 5_____________

Query      401 LAVCEILVLASLNRVVDLMSHQDRGTLFLMWNPDGTKIATGGLDDTFSLWNFFPTYKREAILRKQEQKAKDKCSSLSLYK 480 
WD40-rpts      _______)   (_________________WD 6_________________)                             

Query      481 GIR 483 
WD40-rpts         

6 WD40-repeats found in QUERY=FBpp0078949 (Len=483):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   187-228      7.01  404.15  0.00022       30.0%     45.88
  WD 2:  Seg 11   239-275      7.91  441.58  7.0e-05       20.0%     43.51
  WD 3:  Seg 14   279-317      9.07  489.19  1.6e-05       30.0%     51.91
  WD 4:  Seg 18   321-358      5.11  325.74  0.00253       12.5%     42.64
  WD 5:  Seg 22   362-408      3.11  243.26  0.03232        5.0%     42.88
  WD 6:  Seg 26   412-451      7.75  434.83  8.6e-05       25.0%     52.70

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  187-228    NLDESTMVFSV--E-SPTSLKYSPDGKHLAI------GCMDRNYPVLDLWE
   WD 2  239-275    --YRKLFFKSM--G-YISCIEWSHDGKEVIC------GTQCGV---IIVLA
   WD 3  279-317    LNTLMQLREHR--H-TVKKMKFAPTHKYFAS------SDTDGK---IFIFD
   WD 4  321-358    KVRLLKLDGRS--I-VFDWHPWTGEDLAVAE------RS-PAS---IFIFN
   WD 5  362-408    RQFVASYRRRDDRI-VIKTLTYSKITGELLVNVIRRDDADLAV---CEILV
   WD 6  412-451    LNRVVDLMSHQ--DRGTLFLMWNPDGTKIAT------GGLDDT---FSLWN

   WD40 Template    GECLRTLSGHT--S-GVTSVSFSPDGKRLVS------GSEDGT---IKVWD