Input parameters:

  Query = FBpp0079161 (Len=730)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0079161, Len=730):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGTNSGATAGINNKPVGGATGAGVLVGGGVGGANSSIGGVLSNSLGGGGSGGLSISGLNAGGQNANVGGMGNVGGDDGGN 80  
WD40-rpts                                                                                      

Query       81 GMVGGGVNNQQATTPQYTIPGILHFIQHEWSRFELERSQWDVDRAELQARIAMLLGERKCLESLKSDLTRRIKMLEYALR 160 
WD40-rpts                                                                                      

Query      161 QERAKFYRLKYGTDPPQLNEFKPSNEDAGLAGEVATDSEVPYSSVSNTTWRQGRQMLRQYLAEIGYTDNIIDVRSNRVRS 240 
WD40-rpts                                                                          (___________

Query      241 ILGLNNNAEHDGSGGGLGGGLGGGTGGENLSPNINGNESNKRASETEGRHTPAKKVQQSIDEIIVDTEAAVMANFEFLGA 320 
WD40-rpts      ____WD 1______________)                                                (________

Query      321 TEMSDDDEISDDLEMVATDNDDTDVKLAKRAKSGKDMLTEEVDGSLGLGELAQLTVNNESDGAYDANSKDGTGGSAGGAG 400 
WD40-rpts      ________WD 2________________)                     (_______________WD 3__________

Query      401 YRKTWNAKYTLRSHFDGVRSLIFHPEEPVLITASEDHTLKLWNLQKTVQAKKSASLDVEPLYTFRAHTGPVLCLGMSSSG 480 
WD40-rpts      _____)(________________WD 4_______________)                  (_______________WD 

Query      481 ETCYSGGLDGNIECWQLPSPNIDPYDCYDPNVHSGTLEGHTDAVWGLTTMQSNIVSCSADGTVKLWSPYNKEPLLRTYTA 560 
WD40-rpts      5______________)                 (______________WD 6______________)          (__

Query      561 SEAEGVPSSVDFVRNEVDHIVVAYNSAHCIVYDTETGKQVVRLEAAQEMSGNTGKFINKVVSHPTLPITITAHEDRHIRF 640 
WD40-rpts      _____________WD 7_______________)          (_________________WD 8_______________

Query      641 WDNTSGTLVHSMVAHLEPVTSLAVDAHGLYLLSGSHDCSIRLWNLDNKTCVQEITAHRKKFDESIFDVAFHATKPYIASA 720 
WD40-rpts      _)   (_________________WD 9________________)   (___________________WD10_________

Query      721 GADGLAKVFV 730 
WD40-rpts      _________)

10 WD40-repeats found in QUERY=FBpp0079161 (Len=730):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   229-263      3.27  249.68  0.02656        5.0%     -0.31
  WD 2:  Seg  4   312-349      7.04  405.62  0.00021       15.0%     45.38
  WD 3:  Seg 10   371-406      3.74  269.08  0.01463       22.5%     39.87
  WD 4:  Seg 14   407-443      9.37  501.66  1.1e-05       37.5%     45.15
  WD 5:  Seg 17   462-496      8.31  457.97  4.2e-05       30.0%     49.48
  WD 6:  Seg 20   514-547      7.39  419.85  0.00014       37.5%     40.24
  WD 7:  Seg 24   558-593      5.22  330.43  0.00219       20.0%     39.18
  WD 8:  Seg 28   604-642      6.47  382.12  0.00044       27.5%     47.10
  WD 9:  Seg 31   646-684      9.67  514.26  7.3e-06       32.5%     54.12
  WD10:  Seg 35   688-730      6.78  394.89  0.00030       22.5%     47.52

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  229-263    -----NIIDVR----SNR-VRSILGLNNNAEHDGSGGGLGGGLGG
   WD 2  312-349    --MANFEFLGA----TEM-SDDDEISDDLEMVATDNDDTDVKLAK
   WD 3  371-406    LAQL--TVNNE----SDG-A-YDANSKDGTGGSAGG-AGYRKTWN
   WD 4  407-443    ---AKYTLRSH----FDG-VRSLIFHPEEPVLITASEDHTLKLWN
   WD 5  462-496    -----YTFRAH----TGP-VLCLGMSSSGETCYSGGLDGNIECWQ
   WD 6  514-547    SG----TLEGH----TDA-VWGLTTMQSN--IVSCSADGTVKLWS
   WD 7  558-593    --YTASEAEGV----PSS-VDFVRNEVDH--IVVAYNSAHCIVYD
   WD 8  604-642    --EAAQEMSGN----TGKFINKVVSHPTLPITITAHEDRHIRFWD
   WD 9  646-684    -GTLVHSMVAH----LEP-VTSLAVDAHGLYLLSGSHDCSIRLWN
   WD10  688-730    -KTCVQEITAHRKKFDES-IFDVAFHATKPYIASAGADGLAKVFV

   WD40 Template    TGECLRTLSGH----TSG-VTSVSFSPDGKRLVSGSEDGTIKVWD