Input parameters:

  Query = FBpp0079187 (Len=318)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0079187, Len=318):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSETLQLRGTLIGHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLYGHSHFISDVVLSSDGNYAL 80  
WD40-rpts         (__________________WD 1_________________)         (_________________WD 2_____

Query       81 SGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLAECKFTIQEDGHTDWVSCVRFSPN 160 
WD40-rpts      ___________)   (_________________WD 3________________)    (__________________WD 

Query      161 HSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINAL 240 
WD40-rpts      4_________________)   (_________________WD 5________________)   (_______________

Query      241 CFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQTLFAGYSDNTIRVWQVSVSAH 318 
WD40-rpts      _WD 6_______________)(_______________________WD 7______________________)      

7 WD40-repeats found in QUERY=FBpp0079187 (Len=318):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       8.98  485.71  1.8e-05       37.5%     52.92
  WD 2:  Seg  5    54-92       9.74  517.17  6.7e-06       37.5%     54.56
  WD 3:  Seg  9    96-134     10.95  566.88  1.4e-06       50.0%     54.61
  WD 4:  Seg 13   139-179      8.22  454.20  4.7e-05       37.5%     57.90
  WD 5:  Seg 17   183-221      9.70  515.43  7.0e-06       30.0%     54.37
  WD 6:  Seg 21   225-261      6.49  382.85  0.00043       32.5%     53.79
  WD 7:  Seg 25   262-312      7.87  439.89  7.3e-05       30.0%     41.73

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     TL-----------QLRGTLIGHNGWVTQIATNPKD--PDTIISASRDKTLIVWK
   WD 2   54-92     -G-----------YPQKRLYGHSHFISDVVLSS-D--GNYALSGSWDQTLRLWD
   WD 3   96-134    -G-----------KTTRRFEGHTKDVLSVAFSA-D--NRQIVSGSRDKTIKLWN
   WD 4  139-179    -C-----------KFTIQEDGHTDWVSCVRFSP-NHSNPIIVSCGWDRTVKVWN
   WD 5  183-221    -C-----------KLKNNHHGHNGYLNTVTVSP-D--GSLCTSGGKDSKALLWD
   WD 6  225-261    -G-----------KNLYTL-EHNDIINALCFSP-N--RYWLCVAY-GPSIKIWD
   WD 7  262-312    LACKKTVEELRPEVVSPTSKADQPQCLSLAWST-D--GQTLFAGYSDNTIRVWQ

   WD40 Template    TG-----------ECLRTLSGHTSGVTSVSFSP-D--GKRLVSGSEDGTIKVWD