Input parameters:

  Query = FBpp0079266 (Len=317)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0079266, Len=317):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIKLIDSVVRSFKVAKIFRENTDKINAIDFAPNGEHLISCSEDDQIVIYDCEKGTQSRTVNSKKYGVDLIHFTHANNTA 80  
WD40-rpts                  (_________________WD 1________________)   (__________________WD 2___

Query       81 IHSSTKVDDTIRYLSLHDNKYLRYFPGHTKKVISLCISPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRPIAAYDPE 160 
WD40-rpts      ______________)   (_________________WD 3________________)(_________________WD 4_

Query      161 GLIFAAGVNSESIKLYDLRSFDKGPFVTFKLNQEKECDWTGLKFSRDGKTILISTNGSVIRLVDAFHGTPLQTFTGYPNN 240 
WD40-rpts      ________________)(_____________________WD 5____________________)   (____________

Query      241 KGIPIEASFSPDSQFIFSGSTDGRVHIWNADTGNKVSVLNGDHPGPVQCVQFNPKYMMLASACTNMAFWLPTSEEGL 317 
WD40-rpts      ______WD 6__________________)   (_________________WD 7_________________)     

7 WD40-repeats found in QUERY=FBpp0079266 (Len=317):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-51       9.56  509.56  8.4e-06       27.5%     53.61
  WD 2:  Seg  6    55-95       7.66  431.00  9.7e-05       25.0%     50.07
  WD 3:  Seg 10    99-137     10.25  537.89  3.5e-06       40.0%     55.95
  WD 4:  Seg 14   138-177      8.89  481.83  2.0e-05       22.5%     49.37
  WD 5:  Seg 18   178-224      8.26  455.73  4.5e-05       20.0%     53.50
  WD 6:  Seg 22   228-269      9.06  488.71  1.6e-05       37.5%     56.73
  WD 7:  Seg 26   273-312      7.66  431.21  9.6e-05       25.0%     48.27

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-51     -FK-------VAKIFRE-NTDK---INAIDFAPNGEHL--ISCSEDDQIVIYD
   WD 2   55-95     -GT-------QSRTVNS-KKYG---VDLIHFTHANNTAIHSSTKVDDTIRYLS
   WD 3   99-137    -NK-------YLRYFPG-HTKK---VISLCISPVEDTF--LSGSLDKTLRLWD
   WD 4  138-177    LRS-------PNCQGLM-HLSG---RPIAAYDPEGLIF--AAGVNSESIKLYD
   WD 5  178-224    LRSFDKGPFVTFKLNQE-KECD---WTGLKFSRDGKTI--LISTNGSVIRLVD
   WD 6  228-269    -GT-------PLQTFTG-YPNNKGIPIEASFSPDSQFI--FSGSTDGRVHIWN
   WD 7  273-312    -GN-------KVSVLNGDHPGP---VQCVQFNPKYMML--ASACTNMAFWLPT

   WD40 Template    TGE-------CLRTLSG-HTSG---VTSVSFSPDGKRL--VSGSEDGTIKVWD