Input parameters:

  Query = FBpp0079780 (Len=420)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0079780, Len=420):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDVDNGEGQVQVHLKTKQEHYAVPDVPYAIDGTVTTVELNTFVNALLRQKDGSSDTDFDFLVFDEYLRGRLCDHLREKAI 80  
WD40-rpts                      (__________________________________WD 1_________________________

Query       81 SFEDAIEIEYVERFPAPEPQDCLLHDDWVSAVKARGKWILSGCYDNTLNLWTNKGKHILTISGHTAPIKAVDWISLDEET 160 
WD40-rpts      _________)     (________________WD 2_______________)  (__________________WD 3___

Query      161 GRFVSTSQDQTAMLWQWNVGSNSVECVSVCKGHERGVDSVSVSPDGLRFATGSWDTMLKVWSAELDDAVEGSSKRMKESG 240 
WD40-rpts      _______________)          (_______________WD 4_______________)                  

Query      241 VRTPKITLQGHRESVSAVQWMDATTLLTGSWDHTLKVWDLSLEGIKTEISTNKSIFDASYSKLNRLILTASADKNLRLYD 320 
WD40-rpts       (________________WD 5________________)(__________________WD 6_________________)

Query      321 PRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQNKLWDCRSPKAPLYDLLGHGEKVLDIDWSNPKYIVSGGV 400 
WD40-rpts            (_________________WD 7_________________)(__________________WD 8___________

Query      401 DNTVRVFKSRKALAEEAETK 420 
WD40-rpts      _______)            

8 WD40-repeats found in QUERY=FBpp0079780 (Len=420):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    17-90       4.15  286.06  0.00866       20.0%     31.55
  WD 2:  Seg  6    96-132      6.81  395.79  0.00029       22.5%     37.58
  WD 3:  Seg  9   135-176      8.72  474.97  2.5e-05       37.5%     52.53
  WD 4:  Seg 14   187-222      9.76  517.67  6.6e-06       45.0%     49.39
  WD 5:  Seg 18   242-279      7.00  403.94  0.00022       40.0%     45.18
  WD 6:  Seg 21   280-320      8.35  459.72  4.0e-05       17.5%     55.78
  WD 7:  Seg 25   327-366      7.82  437.87  7.8e-05       35.0%     53.02
  WD 8:  Seg 29   367-408      7.22  412.73  0.00017       32.5%     49.68

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-90     KQ-E---HYAVPDVPYAIDGTVTTVELNTFVNALLRQKDGSSDTDF---DFLVFDEYL-RGRLCDHLREKAISFEDAIEIEY
   WD 2   96-132    -A-P---EPQ----------DCL--------------LHDDWV--S---AVKARGKWI-LSG----------CYDNTLNLWT
   WD 3  135-176    -G-K---HIL----------TIS--------------GHTAPIKAVDWISLDEETGRF-VST----------SQDQTAMLWQ
   WD 4  187-222    --------VS----------VCK--------------GHERGVDSV---SVSPDGLRF-ATG----------SWDTMLKVWS
   WD 5  242-279    -R-T---PKI----------TLQ--------------GHRESVSAV---QWM-DATTL-LTG----------SWDHTLKVWD
   WD 6  280-320    LSLE---GIK----------TEI--------------STNKSIFDA---SYSKLNRLI-LTA----------SADKNLRLYD
   WD 7  327-366    -S-V---VRN----------TYL--------------GHNAWVQTV---MWSTTEEFLFVSG----------AYDNQNKLWD
   WD 8  367-408    CR-SPKAPLY----------DLL--------------GHGEKVLDI---DWS-NPKYI-VSG----------GVDNTVRVFK

   WD40 Template    TG-E---CLR----------TLS--------------GHTSGVTSV---SFSPDGKRL-VSG----------SEDGTIKVWD