Input parameters:

  Query = FBpp0079870 (Len=462)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0079870, Len=462):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTETNPSEISPPSEEPPAEDESTDHSPAEAVLSNNSSSVCNVVEPDDEHEVNSVDREDTASLFSTTTTTTRSKSPNTRKL 80  
WD40-rpts                               (_________________WD 1________________)                

Query       81 NRLCRRIKAPKMVQPLYKYSSHVREDHNHQIFGVQFNPFLDRGQPQVFATVGKDRVSIYECERSTGQESCEGIRLLQVYA 160 
WD40-rpts                       (___________________WD 2__________________)       (____________

Query      161 DPDTDESFYTCAWSYDSVTGDPVLAAAGYRGVIRIFNPVKHQCSKNYIGHGHAINELKFHPTRPQLLLSGSKDHSLRLWN 240 
WD40-rpts      __________WD 3______________________)   (_________________WD 4_________________)

Query      241 IQSDVCVAVFGGVEGHRDEVLSVDFDLRGDRIMSSGMDHSLKLWRLDKPDIKEAIELSSGFSPNKNTGPFPTIKEHFPDF 320 
WD40-rpts            (_________________WD 5________________)                               (___

Query      321 STRDIHRNYVDCVQWFGDFVFSKSCENSIVCWKPGKLSESWHEIKPQESATTVLHHFDYKMCEIWFVRFAFNAWQKILAL 400 
WD40-rpts      _____________WD 6_______________)             (____________________WD 7_________

Query      401 GNQLGTTFVWELDCNDPNLTKCSQLVHPKSNSTIRQTSFSKDGSILVCVCDDSTVWRWDRVN 462 
WD40-rpts      __________)         (_________________WD 8________________)   

8 WD40-repeats found in QUERY=FBpp0079870 (Len=462):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    26-64       8.47  464.37  3.4e-05       20.0%     38.51
  WD 2:  Seg  7    98-140      5.11  325.54  0.00255       12.5%     53.12
  WD 3:  Seg 11   148-197      4.35  294.17  0.00674       12.5%     52.67
  WD 4:  Seg 15   201-240      8.37  460.33  3.9e-05       27.5%     56.86
  WD 5:  Seg 19   247-285      8.44  463.13  3.6e-05       30.0%     45.31
  WD 6:  Seg 24   317-353      4.97  320.02  0.00303       22.5%     41.97
  WD 7:  Seg 27   367-411      6.02  363.20  0.00079       27.5%     47.92
  WD 8:  Seg 30   421-459      7.51  424.76  0.00012       30.0%     49.91

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-64     -S------PAEAVLSNNSS------SVCNVVEPD-----D----EHEVNSVDREDTASLFS
   WD 2   98-140    -K------YSSHVREDHNH------QIFGVQFNPFLDRGQ----PQVFATVGKD-RVSIYE
   WD 3  148-197    ESCEGIRLLQVYADPDTDE------SFYTCAWSY-----DSVTGDPVLAAAGYRGVIRIFN
   WD 4  201-240    -H------QCSKNYIGHGH------AINELKFHP-----T---RPQLLLSGSKDHSLRLWN
   WD 5  247-285    -V------AVFGGVEGHRD------EVLSVDFDL-----R----GDRIMSSGMDHSLKLWR
   WD 6  317-353    -F------PDFSTRDIHRN------YVDCVQWF-----------GDFVFSKSCENSIVCWK
   WD 7  367-411    -Q------ESATTVLHHFDYKMCEIWFVRFAFNA-----W----QKILALGNQLGTTFVWE
   WD 8  421-459    -K------CSQLVHPKSNS------TIRQTSFSK-----D----GSILVCVCDDSTVWRWD

   WD40 Template    TG------ECLRTLSGHTS------GVTSVSFSP-----D----GKRLVSGSEDGTIKVWD