Input parameters:

  Query = FBpp0080048 (Len=914)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0080048, Len=914):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILTGSDDMQ 80  
WD40-rpts              (_______________WD 1______________)   (_________________WD 2____________

Query       81 IRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMWACQRVFEGHTHYVMQIVFNPKDNNTFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)(___________________WD 4_________

Query      161 ASLDRTVKVWQLGSNFANFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHPE 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIVLTGSEDGTVRIWHSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIKVGREEPAMSMDVVGSKIIWAKH 320 
WD40-rpts      ________________)(__________________WD 7__________________)                     

Query      321 SEMQQVNLKTIADGTEIKDGERLPVATKDMGACEIYPQTIAHNPNGRFVVVCGDGEYIIYTSMALRNKAFGSAQEFVWAL 400 
WD40-rpts                           (__________________WD 8_________________)(_______________WD

Query      401 ESNEYAIRENNGTVRLFRNFKERKSFTPEYGAESIYGGYYFGVKTSSGLAFYDWETLQLVRRIEVQPKNVFWNESGSLVC 480 
WD40-rpts       9_______________)                                   (_________________WD10_____

Query      481 LATDDSYFVLGVDTAQVANAVETKEGLEDDGVESAFNVLGEVSECVKTGLWVGDCFIYTNSVNRINYYVGGEIVTVSHLD 560 
WD40-rpts      ___________)                                        (_______________WD11________

Query      561 RTMYLLGYVPKDNRIYLGDKELNVISFCLQLSVLEYQTAVMRRDFERADVVLPTIPKEHRTRVAHFLEKQGFKSQALQVS 640 
WD40-rpts      ______)                                                                         

Query      641 TDADHKFDLALQIGDLEIALKLARESENSQKWSQLADVASSKNNMSLVKECMQKANDLSGLLLLSTASGDAQLLEVVGAA 720 
WD40-rpts                                                                                      

Query      721 GSAQGHHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSRIVELWREKLGKVNEKAGQSLADPAQYTNLF 800 
WD40-rpts                                                                                      

Query      801 PGLGDALRVEQHLQEERARKAPARLAANLPLNSERHPLQELFAAEQGAAGQHLEEKVKPAYVPAQAVVSSSQVAEPTSAA 880 
WD40-rpts                                                                                      

Query      881 DDDDDLDLEIDGITLDDNIDTTDVNLDDDFLSDD 914 
WD40-rpts                                        

11 WD40-repeats found in QUERY=FBpp0080048 (Len=914):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-43       4.85  315.18  0.00352       15.0%     49.74
  WD 2:  Seg  4    47-85       6.73  392.64  0.00032       20.0%     56.97
  WD 3:  Seg  8    89-127      7.82  437.89  7.8e-05       20.0%     56.27
  WD 4:  Seg 12   128-171      7.93  442.11  6.8e-05       40.0%     55.72
  WD 5:  Seg 16   172-215      8.00  444.93  6.3e-05       40.0%     53.11
  WD 6:  Seg 20   219-257      9.70  515.33  7.0e-06       37.5%     55.24
  WD 7:  Seg 24   258-299      4.93  318.19  0.00320       17.5%     55.91
  WD 8:  Seg 32   342-382      4.09  283.74  0.00930       10.0%     41.59
  WD 9:  Seg 36   383-418      3.21  247.41  0.02847        5.0%     41.40
  WD10:  Seg 43   454-492      3.21  247.29  0.02858       12.5%     38.21
  WD11:  Seg 49   533-567      3.04  240.20  0.03548       12.5%     41.40

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-43     -----------RRLTSRSDRVKCVDLHP-AEPW--MLCALYNGHVHIMN
   WD 2   47-85     -Q--Q---M-VKDFEVCDVPVRSARFVA-RKNW--ILTGSDDMQIRVFN
   WD 3   89-127    -L--E---K-VHSFEAHSDYLRCIAVHP-TQPL--VLTSSDDMLIKLWN
   WD 4  128-171    WE--KMWAC-QRVFEGHTHYVMQIVFNPKDNNT--FASASLDRTVKVWQ
   WD 5  172-215    LG--S-NFA-NFTLEGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWD
   WD 6  219-257    -K--T---C-VQTLEGHAQNISAVCFHP-ELPI--VLTGSEDGTVRIWH
   WD 7  258-299    SGTYR---L-ETCLNYGFERVWTISSMR-GTNN--VALGYDEGSIIIKV
   WD 8  342-382    RL--P---VATKDMGACEIYPQTIAHNP-NGRF--VVVCGDGEYIIYTS
   WD 9  383-418    ----------MALRNKAFGSAQEFVWAL-ESNE--YAIRENNGTVRLFR
   WD10  454-492    -W--E---T-LQLVRRIEVQPKNVFWNE-SGSL--VCLATDDSYFVLGV
   WD11  533-567    -----------GDCFIYTNSVNRINYYV-GGEI--VTVSHLDRTMYLLG

   WD40 Template    TG--E---C-LRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD