Input parameters:

  Query = FBpp0080100 (Len=627)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0080100, Len=627):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGTLGNQFILSRERRRFGRQCLFTDRNEMILSVQPSGRLRLKYILRNPINERTQLSEQYAASSVLTHNVTLDSHGLNHYE 80  
WD40-rpts                                                                                      

Query       81 GGWNVKEVNIMDEESTMRYRKKVERDDSWGIEVNQLMHAAMDISSANNAVNIYEDFFVDLPEDLGRGISMKIAARGTHVF 160 
WD40-rpts                                                                                      

Query      161 HDLWIPSRRLMTCEWLNNDPNQFLLFYSNRMSLTPDYTKQLNTLPDFGNDNPHAFYIWNLDDATRPAAHYDSRRVVRVAK 240 
WD40-rpts                                                                 (___________________W

Query      241 VCLRDESYMVGGLQEGQVGFWLTENQGGPKSMCPLEACHREATTAICWVHSKLNTEFYSGSLDGSIKYWDTRDLLMPVHE 320 
WD40-rpts      D 1__________________)(_____________________WD 2_____________________)          

Query      321 VLAEPDPQTVQNRQDAHGVTFLEFEYTIPVRFIFCTDMGYLFVGNRKGTTPQDTIVAAYQLFAGPIRCVMRNPFFVKNFL 400 
WD40-rpts                                                    (____________________WD 3_________

Query      401 VVGDWRVRIWSEEVKNCPSTFYFRRPNQLLSGAWSTGRCSLFCIGDNMGNLEFWDLLMSHKRPILTIKYKYAVTHLVFKP 480 
WD40-rpts      __________)                                            (___________________WD 4_

Query      481 DGTMLTVSLANGDCLMLRLEEGMRSATNKEKSLMMSMFEREIQRCKLLEAREEEIKLKKRLTTIFLEEERKSREKLEAKK 560 
WD40-rpts      _________________)                                                              

Query      561 KKGQAKKEMEPKVEDEATIFLRMIESDSEFSKALLEFNEAMENVAIQRSKRTFAMERTVFEMHQPIP 627 
WD40-rpts                                                                         

4 WD40-repeats found in QUERY=FBpp0080100 (Len=627):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   220-262      2.87  233.38  0.04366       20.0%     35.50
  WD 2:  Seg 12   263-310      4.36  294.58  0.00665       32.5%     43.31
  WD 3:  Seg 19   367-411      4.04  281.43  0.00999       12.5%     39.10
  WD 4:  Seg 26   456-498      2.90  234.30  0.04247       20.0%     46.54

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  220-262    LDD------ATRP---AAHYDSRRVVRVAKV--CLRDESYMVGGLQEGQVGFWL
   WD 2  263-310    TENQGGPKSMCPL---EACHREA--TTAICWVHSK-LNTEFYSGSLDGSIKYWD
   WD 3  367-411    KGT-TPQDTIVAA---YQLFAGP--IRCVMR--NP-FFVKNFLVVGDWRVRIWS
   WD 4  456-498    LLM------SHKRPILTIKYKYA--VTHLVF--KP-DGTMLTVSLANGDCLMLR

   WD40 Template    TGE------CLRT---LSGHTSG--VTSVSF--SP-DGKRLVSGSEDGTIKVWD