Input parameters:

  Query = FBpp0080211 (Len=721)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0080211, Len=721):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVNEVNDVKIYNLSAGKSVPDWLTDRRKRSQLMKKVDSRRQIELIQDFDMPGVCTSIRMSPDQQYILATGTYKPRVKCF 80  
WD40-rpts                                       (_____________________WD 1_____________________

Query       81 EVSNLSIKFERCFDAEVTTFEVISDDYSKMVFLQCDRYVEIHAAHGRHYRLRIPRFGRDMKYHKPSCDMFIVGVGRDIFR 160 
WD40-rpts      )(__________________WD 2__________________)                                     

Query      161 LNLERGQFLQPFETDGSCLNACEVNPEHHLLVAGTKEGTVEAWDPRTKQRCSTLDVAMKLPGVKEFPSVTALKFRNGLHM 240 
WD40-rpts           (_________________WD 3________________)         (_________________WD 4_____

Query      241 GVGTASGHVLIYDIRAKQPLLVKNHLNRLPIKRLAFNPAQNAVYSLDEATLKLWDEQTGKQIAYVESTSSFNDFCTIPDT 320 
WD40-rpts      ____________)(__________________WD 5__________________)   (________________WD 6_

Query      321 GMFFVAQEDVKMMTYYVPAMGPAPRWCSFLDNLTEEIESEVVENVYDDYQFVTAKELAELGMEHLVGSNLLKGYMHGYFM 400 
WD40-rpts      _______________)                                                                

Query      401 DARLYNKAKAVVEPFAFDRFRKDKIRQEIESERKSRLQIESKLPKVNKELALKIMDEQANPSNSAKQRNVPSLLEDSRFK 480 
WD40-rpts                                                                                      

Query      481 AMFENADFEVNKSAEEYRLLAPVLNRLDKSKAKELKKRVEVAHVAELHADEAQQREESDNDEDLFGFEKSDGETKDDSGD 560 
WD40-rpts                                                                                      

Query      561 EASSDDDDRREYVKEMKQAYKQVKRQREEEEELEDDEQQPDEISDTAKRPQTNGHSQQPTTNGNRFTMTPLDQHQGSSLL 640 
WD40-rpts                                                                                      

Query      641 QQRIKKASLQDRVRVMSQLEGQVTNVGRSLGNRQMTFEVNKQKKSQFHAKKREAEMKKHREERRSIVRPIKSLRLKKVNF 720 
WD40-rpts                                                                                      

Query      721 K 721 
WD40-rpts       

6 WD40-repeats found in QUERY=FBpp0080211 (Len=721):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    34-81       3.31  251.20  0.02535       22.5%     45.20
  WD 2:  Seg  6    82-123      3.04  240.26  0.03542       15.0%     54.58
  WD 3:  Seg 14   166-204      7.47  423.20  0.00012       27.5%     54.96
  WD 4:  Seg 19   214-253      4.32  293.22  0.00694       17.5%     40.58
  WD 5:  Seg 22   254-295      3.80  271.79  0.01346       20.0%     51.18
  WD 6:  Seg 26   299-336      3.04  240.23  0.03545       15.0%     52.89

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   34-81     MKK---VDSRRQIELIQDF-DMPGVCTSIRM-SPDQQYILATGTYKPRVKCFE
   WD 2   82-123    VSN---L------SIKFER-CFDAEVTTFEVISDDYSK-MVFLQCDRYVEIHA
   WD 3  166-204    -GQ---F-------LQPFE-TDGSCLNACEV-NPEHHL-LVAGTKEGTVEAWD
   WD 4  214-253    LDV---A-------MKLPGVKEFPSVTALKF-R-NGLH-MGVGTASGHVLIYD
   WD 5  254-295    IRAKQPL-------LVKNH-LNRLPIKRLAF-NPAQNA-VYS-LDEATLKLWD
   WD 6  299-336    -GK---Q-------IAYVE-STSS-FNDFCT-IPDTGM-FFVAQEDVKMMTYY

   WD40 Template    TGE---C-------LRTLS-GHTSGVTSVSF-SPDGKR-LVSGSEDGTIKVWD