Input parameters:

  Query = FBpp0080391 (Len=526)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0080391, Len=526):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQFNFVSDLQNALIMDGETRGPAPRWKKKLEASLNGSVNTTRSVLSVSYNTSFSGVQAPTKTPGKSSEGKTKKSNTTPS 80  
WD40-rpts                                                                                      

Query       81 KTPGGGDRFIPNRAATNFELAHFLVNKDSGDKSDEENDKATSSNSNESNVQASAHKGDRQKLISEVAQVGDSKGGRILCY 160 
WD40-rpts                                                                                      

Query      161 QNKAPAAPETHNNPLKVVYSIKTPISTKSGSRYIPTTSERILDAPDFINDYYLNLMDWSADNIVAVALGSCVYLWNAQTG 240 
WD40-rpts      (____________________WD 1____________________)                              (___

Query      241 NIEQLTEFEEGDYAGSLSWIQEGQILAIGNSTGAVELWDCSKVKRLRVMDGHSARVGSLAWNSFLVSSGSRDGTIVHHDV 320 
WD40-rpts      ________________WD 2__________________)   (________________WD 3_______________) 

Query      321 RAREHKLSTLSGHTQEVCGLKWSTDFKYLASGGNDNLVNVWSAASGGVGTATDPLHKFNDHQAAVRALAWCPWQPSTLAS 400 
WD40-rpts         (_________________WD 4________________)(_______________________WD 5__________

Query      401 GGGTADRCIKFWNVNNGTLMKSVDSKSQVCSLLFSRHYKELISAHGFANNQLTIWKYPTMVKQADLTGHTSRVLQMAMSP 480 
WD40-rpts      ____________)   (_________________WD 6_________________)   (_________________WD 

Query      481 DGSTVISAGADETLRLWNCFAPDPLASKKAVSTSKGKQSVFRQSIR 526 
WD40-rpts      7________________)                            

7 WD40-repeats found in QUERY=FBpp0080391 (Len=526):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   161-206      3.77  270.38  0.01406       10.0%     -3.31
  WD 2:  Seg  8   237-279      6.59  387.02  0.00038       22.5%     52.66
  WD 3:  Seg 12   283-319      6.65  389.23  0.00035       35.0%     55.95
  WD 4:  Seg 16   324-362      9.33  500.23  1.1e-05       42.5%     49.93
  WD 5:  Seg 20   363-413      5.53  343.10  0.00148       27.5%     40.40
  WD 6:  Seg 23   417-456      5.06  323.68  0.00270       27.5%     49.16
  WD 7:  Seg 27   460-498      9.42  503.87  1.0e-05       35.0%     55.50

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  161-206    QN--------K---APAAPETHNNPLKVVYSIKTPISTK-SGSRYIP--TTSERILDAPD
   WD 2  237-279    AQ--------TGNIEQLTEFEEGD------YAGSLSWIQ-EGQILAI--GNSTGAVELWD
   WD 3  283-319    -V--------K---RLRVMDGHSA------RVGSLAW---NSFLVSS--GSRDGTIVHHD
   WD 4  324-362    -E--------H---KLSTLSGHTQ------EVCGLKWST-DFKYLAS--GGNDNLVNVWS
   WD 5  363-413    AASGGVGTATD---PLHKFNDHQA------AVRALAWCPWQPSTLASGGGTADRCIKFWN
   WD 6  417-456    -G--------T---LMKSVDSK-S------QVCSLLFSR-HYKELISAHGFANNQLTIWK
   WD 7  460-498    -M--------V---KQADLTGHTS------RVLQMAMSP-DGSTVIS--AGADETLRLWN

   WD40 Template    TG--------E---CLRTLSGHTS------GVTSVSFSP-DGKRLVS--GSEDGTIKVWD