Input parameters:

  Query = FBpp0080649 (Len=646)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0080649, Len=646):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHVISTSKKTVLSDFADLETKSEYVHQNAEPTDFQFNGQRRVFVEVDKMAGLAVMRIKEKDGKTPEIQRVRKLTIDNAFC 80  
WD40-rpts                                                         (_______________________WD 1_

Query       81 VACAKQSLEEIAVGQSGCVKLYNFRTAQLIHRFPADPQRSTVLYMDYNNTDEYIAAVRDGGDISILGTKTKQKTNTFTID 160 
WD40-rpts      ______________________)(___________________WD 2___________________)   (_________

Query      161 GDSTLVRFHPSKRFHLSIASYKGAVTVYDVQGMRKIFHASEAHSAPCRDISMCTSQPALLVSVGYDCKINIFDIRRNRAQ 240 
WD40-rpts      ________WD 3________________)    (_________________WD 4_________________)     (_

Query      241 ASTDRLTYSHPLSTVALSECGTYLCAGNLKGELIAYDMRSTKAPLAVRSVHDAAVTRVAFVPVPSGDNQQNGSLNSSENA 320 
WD40-rpts      ________________WD 5________________)    (__________________WD 6________________

Query      321 TGLATEAPRVERAPSDELRKSIAANLLSTQNQLTSLGYGVSTPTIVRRDSFCEFLDAQGPRAVDRMSTRLGASYRDSFDW 400 
WD40-rpts      _)  (___________________WD 7__________________)                                 

Query      401 ETLNRKPQPYETANRQSLCPPVASGPSSVDNSVNSSTTESLQQTLSGPLKDRSNISGDGKLMKIAETDELCEEQSANISV 480 
WD40-rpts                                                                                      

Query      481 ASSTGGGSDKENPPPVDAEMKRRLRLLSASRNSTPHHANITPQSSNPLLKPQQLLAKSSSGLSAQMDADWRKEFSELRDF 560 
WD40-rpts                                                                                      

Query      561 VDQRCEKVERELEYVTFSNQRLLANKMTNYMDQQVENTREIRDALALLLQGDSFMREFSRLQNENEMLKAKLKFYQEQEQ 640 
WD40-rpts                                                                                      

Query      641 TESCGE 646 
WD40-rpts            

7 WD40-repeats found in QUERY=FBpp0080649 (Len=646):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    52-103      6.31  375.36  0.00054        7.5%     50.11
  WD 2:  Seg 10   104-147      6.59  387.06  0.00038       10.0%     48.02
  WD 3:  Seg 14   151-189      5.85  356.30  0.00098       25.0%     53.49
  WD 4:  Seg 18   194-233      6.34  376.36  0.00053       20.0%     53.56
  WD 5:  Seg 22   239-277      7.52  425.47  0.00011       20.0%     46.14
  WD 6:  Seg 25   282-322      6.93  401.09  0.00024       27.5%     45.74
  WD 7:  Seg 29   325-367      3.13  243.98  0.03162       12.5%     34.18

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   52-103    LAVM----RIKEKDGKTPEIQRVRKLTIDNAFCVACAK--QSL-EEIAVGQSGCVKLYN
   WD 2  104-147    FRTAQLIHRFPADPQRS------------TVLYMDYNN--TDE-YIAAVRDGGDISILG
   WD 3  151-189    -KQK----TNTFTIDGD-------------STLVRFHP--SKRFHLSIASYKGAVTVYD
   WD 4  194-233    -RKI----FHASEAHSA------------PCRDISMCT-SQPA-LLVSVGYDCKINIFD
   WD 5  239-277    AQAS----TDRL-TYSH------------PLSTVALSE--CGT-YLCAGNLKGELIAYD
   WD 6  282-322    -KAP----LAVRSVHDA------------AVTRVAFVPVPSGD-NQQNGSLNSSENATG
   WD 7  325-367    -TEA----PRVERAPSD--------ELRKSIAANLLST--QNQ-LTSLGYGVSTPTIVR

   WD40 Template    TGEC----LRTLSGHTS------------GVTSVSFSP--DGK-RLVSGSEDGTIKVWD