WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: FBpp0080879    [Drosophila melanogaster]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = FBpp0080879 (Len=367)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0080879, Len=367):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPQRSSELYRTPVTHQPPPALELAGNLEYPNLNIADLNARLENLSPRLHDCWDSIAINDHNHLALATNRREGRQWWGML 80  
WD40-rpts                                            (_________________WD 1________________)   

Query       81 FGYGRDQMHHMSVDSANFKLQAEHTVNIVRYAEDDFLLVALGDTRLQAWSTYSKVRDSQSPYCLFLVGESSAHPTPISQL 160 
WD40-rpts         (_____________________WD 2____________________)             (________________

Query      161 SVFKADPRTAVSGSADSTLNVWDLSGADMVSTYRSRSSHTDKLTGLATPAASVDKFVTCDRGGCARLWDVRAAAPSSTCL 240 
WD40-rpts      _WD 3_________________)(____________________WD 4____________________)       (___

Query      241 YADASHVLSFTSAAWAAASELQGDNHIYLGDYDGKVHTLDIRVPRKLAETREYFDKGHVAQLLINGPHLAAMSNLPASVK 320 
WD40-rpts      ________________WD 5___________________)   (_________________WD 6_______________

Query      321 VANVQAGHEFIYTHQDTHSRLTDAVWTDDSTLITIGHGRKMVTHAIK 367 
WD40-rpts      __)    (_________________WD 7________________) 



7 WD40-repeats found in QUERY=FBpp0080879 (Len=367):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    39-77       5.13  326.45  0.00248        5.0%     36.95
  WD 2:  Seg  6    84-130      4.61  305.07  0.00481       17.5%     41.42
  WD 3:  Seg 10   144-183      8.59  469.55  2.9e-05       35.0%     46.82
  WD 4:  Seg 13   184-229      6.97  402.40  0.00023       22.5%     49.25
  WD 5:  Seg 17   237-280      7.32  417.13  0.00015       22.5%     54.32
  WD 6:  Seg 21   284-323      6.62  388.22  0.00036       12.5%     52.31
  WD 7:  Seg 25   328-366      5.58  345.02  0.00139       15.0%     50.38
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   39-77     NA-----RLENLSP--------RLHDCWDSIA-INDHN-----HLAL-ATN-RREGRQWW
   WD 2   84-130    GR-----DQMHHMSVDSANFKLQAEHTVNIVR-YAEDD------FLL-VALGDTRLQAWS
   WD 3  144-183    -L-----FLVGESS--------AHPTPISQLSVFKADP-----RTAV-SGSADSTLNVWD
   WD 4  184-229    LSGADMVSTYRSRS--------SHTDKLTGLA-TPAAS----VDKFV-TCDRGGCARLWD
   WD 5  237-280    -S-----TCLYADA--------SHVLSFTSAA-WAAASELQGDNHIY-LGDYDGKVHTLD
   WD 6  284-323    -P-----RKLAETR--------EYFDKGHVAQ-LLING-----PHLAAMSNLPASVKVAN
   WD 7  328-366    -H-----EFIYTHQ--------DTHSRLTDAV-WTDDS-----TLIT-IGHGRKMVTHAI

   WD40 Template    TG-----ECLRTLS--------GHTSGVTSVS-FSPDG-----KRLV-SGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019