Input parameters:
Query = FBpp0080879 (Len=367)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0080879, Len=367):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFPQRSSELYRTPVTHQPPPALELAGNLEYPNLNIADLNARLENLSPRLHDCWDSIAINDHNHLALATNRREGRQWWGML 80
WD40-rpts (_________________WD 1________________)
Query 81 FGYGRDQMHHMSVDSANFKLQAEHTVNIVRYAEDDFLLVALGDTRLQAWSTYSKVRDSQSPYCLFLVGESSAHPTPISQL 160
WD40-rpts (_____________________WD 2____________________) (________________
Query 161 SVFKADPRTAVSGSADSTLNVWDLSGADMVSTYRSRSSHTDKLTGLATPAASVDKFVTCDRGGCARLWDVRAAAPSSTCL 240
WD40-rpts _WD 3_________________)(____________________WD 4____________________) (___
Query 241 YADASHVLSFTSAAWAAASELQGDNHIYLGDYDGKVHTLDIRVPRKLAETREYFDKGHVAQLLINGPHLAAMSNLPASVK 320
WD40-rpts ________________WD 5___________________) (_________________WD 6_______________
Query 321 VANVQAGHEFIYTHQDTHSRLTDAVWTDDSTLITIGHGRKMVTHAIK 367
WD40-rpts __) (_________________WD 7________________)
7 WD40-repeats found in QUERY=FBpp0080879 (Len=367):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 39-77 5.13 326.45 0.00248 5.0% 36.95
WD 2: Seg 6 84-130 4.61 305.07 0.00481 17.5% 41.42
WD 3: Seg 10 144-183 8.59 469.55 2.9e-05 35.0% 46.82
WD 4: Seg 13 184-229 6.97 402.40 0.00023 22.5% 49.25
WD 5: Seg 17 237-280 7.32 417.13 0.00015 22.5% 54.32
WD 6: Seg 21 284-323 6.62 388.22 0.00036 12.5% 52.31
WD 7: Seg 25 328-366 5.58 345.02 0.00139 15.0% 50.38
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 39-77 NA-----RLENLSP--------RLHDCWDSIA-INDHN-----HLAL-ATN-RREGRQWW
WD 2 84-130 GR-----DQMHHMSVDSANFKLQAEHTVNIVR-YAEDD------FLL-VALGDTRLQAWS
WD 3 144-183 -L-----FLVGESS--------AHPTPISQLSVFKADP-----RTAV-SGSADSTLNVWD
WD 4 184-229 LSGADMVSTYRSRS--------SHTDKLTGLA-TPAAS----VDKFV-TCDRGGCARLWD
WD 5 237-280 -S-----TCLYADA--------SHVLSFTSAA-WAAASELQGDNHIY-LGDYDGKVHTLD
WD 6 284-323 -P-----RKLAETR--------EYFDKGHVAQ-LLING-----PHLAAMSNLPASVKVAN
WD 7 328-366 -H-----EFIYTHQ--------DTHSRLTDAV-WTDDS-----TLIT-IGHGRKMVTHAI
WD40 Template TG-----ECLRTLS--------GHTSGVTSVS-FSPDG-----KRLV-SGSEDGTIKVWD