Input parameters:

  Query = FBpp0081016 (Len=471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0081016, Len=471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTYQMNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVERLFNSSLVVLVTAQKPNCLKMLHFKKKQDI 80  
WD40-rpts                                   (___________________WD 1___________________)(______

Query       81 CNCFYPSEILCVRMNRQRLIVCLAESIHIHDIRDMKILHSIENIAPNEQGLCALSLNSHLAFPVCQTSGELRIFNASKLR 160 
WD40-rpts      __________WD 2________________)                                               (_

Query      161 TGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVKNGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHV 240 
WD40-rpts      ________________WD 3_________________)   (__________________WD 4________________

Query      241 FKIDTRAVETVELKAIADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLPTQVSEVLAQDRSFATVQLAQ 320 
WD40-rpts      _)   (_________________WD 5________________)                        (___________

Query      321 GGLKHICALTRVQKEPRLLIACEDGFLYVHEFPAERGGPCKLMSVHDLRGALEDVIELELSESVQRSQTKPSNPSTVTQP 400 
WD40-rpts      ________WD 6__________________)                                                 

Query      401 SLTMLKSCAASVLIENPDPMQDNSYASILKGDQADAMSDSAKFRKLCDAIDTPTKLYDERQFPPVAITAKD 471 
WD40-rpts                                                                             

6 WD40-repeats found in QUERY=FBpp0081016 (Len=471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    30-73       6.45  380.96  0.00046       10.0%     39.38
  WD 2:  Seg  8    74-111      3.28  250.08  0.02623       10.0%     40.99
  WD 3:  Seg 16   159-198      8.08  448.35  5.6e-05       32.5%     53.55
  WD 4:  Seg 20   202-242      7.16  410.23  0.00018       25.0%     56.58
  WD 5:  Seg 23   246-284      6.46  381.57  0.00045        7.5%     13.74
  WD 6:  Seg 26   309-351      4.13  285.23  0.00889       20.0%     53.35

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-73     SQDKVEEI---F-AKDNTEQIRIVERLFNSSLVVLVTAQKPNC-LKMLH
   WD 2   74-111    FKKKQDIC---NCFYPS----EILCVRMNRQRLIVCL---AES-IHIHD
   WD 3  159-198    -LRTGMTI---R-AHDT----SLSALAFSPSGALLATASERGTVIRVFC
   WD 4  202-242    -GQRVQEF---R-RGVS--CVRIASLVFSASGDFLCASSNTET-VHVFK
   WD 5  246-284    -RAVETVE---L-KAIA----DVAAKSENSAKEAVASTAAEES-CRPVA
   WD 6  309-351    QDRSFATVQLAQ-GGLK----HICALTRVQKEPRLLIACEDGF-LYVHE

   WD40 Template    TGECLRTL---S-GHTS----GVTSVSFSPDGKRLVSGSEDGT-IKVWD