Input parameters:

  Query = FBpp0081440 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0081440, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLTEQNPYGNGLLYAAFNQDQGCFACATDTGFRVYNCDPLKEKERQYFPEGGLSHVEMLFRCNYLALVGGGIRPLYPPN 80  
WD40-rpts      (________________WD 1_______________)   (____________________WD 2_______________

Query       81 KVIVWDDLKKSPAISLDFNQPVRAVRLRRDRIVVVLEGVIKVFTFTQQPQQLHVFETSSNPNGLCVLCPHSNKSLLAFPG 160 
WD40-rpts      _____)(________________WD 3________________)(____________________WD 4___________

Query      161 RRTGHVQIVDLANTERAPLEVIAHEAGISCIALNLQGTRLATAGEKGTLIRIFDTESGKKVSELRRGSNHANIFCINFNH 240 
WD40-rpts      _________)(___________________WD 5___________________)   (__________________WD 6

Query      241 QSTMVVVASDHGTIHVFNLEDNKPRESSLPIIPKYFSSQWSFVKFSIPQGPRCVCAFGADPNSVVAICADGHYYKFLFNN 320 
WD40-rpts      _________________)(___________________________WD 7__________________________)   

Query      321 KGECSRDICTQFLELQDDET 340 
WD40-rpts                          

7 WD40-repeats found in QUERY=FBpp0081440 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.58  345.08  0.00139       15.0%     41.17
  WD 2:  Seg  4    41-86       4.84  314.65  0.00357       15.0%     43.37
  WD 3:  Seg  8    87-124      3.89  275.21  0.01211       22.5%     41.18
  WD 4:  Seg 12   125-170      4.56  302.85  0.00515       17.5%     43.08
  WD 5:  Seg 16   171-214      7.53  425.55  0.00011       27.5%     49.34
  WD 6:  Seg 20   218-258      7.15  410.04  0.00019       22.5%     55.95
  WD 7:  Seg 24   259-317      4.67  307.71  0.00443       15.0%     57.49

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     MN---------------------LT---EQ-----N-PYG--NGLLYAAFNQDQGCFA-------CAT-DTG-FRVYN
   WD 2   41-86     -LK-------------------EKE---RQ-----Y-FPE--GGLSHVEMLFRCNYLALVGGGIRPLYPPNK-VIVWD
   WD 3   87-124    DLK-------------------KSP---AI-----SLDFN--QPVRAVRLRRDRIVVV-------L---EGV-IKVFT
   WD 4  125-170    FTQ-------------------QPQ---QLHVFETS-SNP--NGLCVLCPHSNKSLLA------FPGRRTGH-VQIVD
   WD 5  171-214    LAN-------------------TERAPLEV-----I-AHE--AGISCIALNLQGTRLA-------TAGEKGTLIRIFD
   WD 6  218-258    -GK-------------------KVS---EL-----R-RGSNHANIFCINFNHQSTMVV-------VASDHGT-IHVFN
   WD 7  259-317    LEDNKPRESSLPIIPKYFSSQWSFV---KF-----S-IPQ--GPRCVCAFGADPNSVV-------AICADGH-YYKFL

   WD40 Template    TGE-------------------CLR---TL-----S-GHT--SGVTSVSFSPDGKRLV-------SGSEDGT-IKVWD