Accession: FBpp0081466 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = FBpp0081466 (Len=1342)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0081466, Len=1342):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNQLVGIAPSQIYAVEHYFSGQFGSEIAFSSNMGSTRFFKVAKAKTDEGQIVVKVFVKHDPTLPLEDHKERLEGIKKTL 80  
WD40-rpts                                                                                      

Query       81 SLANAVNCLPFQRVELIDKAAYIMREYVKHSLYDRVSTRPFLTVLEKKWITFQILCALNQCHKQKICHGDIKLENILITS 160 
WD40-rpts                                                                                      

Query      161 WNWILLSDFASFKPTYLPEDNPADYTYFFDTSRRRTCYIAPERFVKTLASDDDGGNGNMSVIHTDSIIRLAPSYAGNTLL 240 
WD40-rpts                                                                                      

Query      241 PAMDIFSAGCALLELWTEGTAPFELSQLLAYRRGERDLVEKHLAGIENERLRNLLASMIDIHSMNRKSAEDYLDQERGQL 320 
WD40-rpts                                                                                      

Query      321 FPEYFYSFLQSYLQMFSSTPIMSPDDKIQCLHKDIGHCIKVLTQAQDLTPEEEEKEEKKDPTLCARLPPEHDGLILIITV 400 
WD40-rpts                                                                                      

Query      401 VTSCIRGLKQSNTKIAALELLQKLSKYTTSETILDRILPYILHLAQKSPAKVQVQAIETLTACLGMVKDIPRSDANVFPE 480 
WD40-rpts                                                                                      

Query      481 YILPSITDLASETSAVIVRVAFARNIAALAKSAVYFLEETQRNAPNDMPTPRYEAELNALHDIVRQAVLSLLTDSQPVVK 560 
WD40-rpts                                                                                      

Query      561 QTLMESGICDLCAFFGKEKANDVILSHIMTFLNDEDKNLRGAFYDNIAGVAGYVGWQASDILVPLLQQGFTDREEFVIAK 640 
WD40-rpts                                                                                      

Query      641 AIRAVTILIELGHIKKPAVTEIVQETACYLCHPNLWVRHEICGMIATTARNLSAIDVQCKIMPAIGAFLKAPLIQVEKPH 720 
WD40-rpts                                                                                      

Query      721 ILLDCVHPPVPRQIFDSVLRFQDIHHFIRALEARSRVRSQTRQGALPQYEEMGQTLRNLFRRLSSEGLTDLIEMQLLAMN 800 
WD40-rpts                                                                                      

Query      801 PFLISMKHKALQDLDDTASGNGRIVVSRKQVACHEYPLADKASKMPLDNRSSEGPTLASPASDAAITPLGAGGLAGSPAS 880 
WD40-rpts                                     (_________________WD 1________________)          

Query      881 GAVVLGVPTATVSAATSLGEYTMPERNCWLERSSECRKDLESLTAKIKSRYNVLAISQRCSYDKLVTPYPPGWRMTGTLV 960 
WD40-rpts                                                                                  (___

Query      961 AHLHEHSESVIKLASLRPHGSLFASGSIDGTVRLWDCSKLNGNQGVNKSRQVYSANTPIYALAACDSGQSLAVGGKDGSM 1040
WD40-rpts      ______________WD 2_________________)         (_________________WD 3_____________

Query     1041 LMMRIDRNSAKMTLQQALNQNDHKDGPVVDMHAYDQATQSVIVYATLYGGIVAWDTRMQHSAWRLQNELRHGVITTICAD 1120
WD40-rpts      ___)           (_________________WD 4_________________)   (__________________WD 

Query     1121 PTGSWLATGTSGGKHICWDLRFRLPIAEIKHPADSWIRKVACHPTEPSYLISASQSNNEVSVWNIETGQRQTVLWASPVA 1200
WD40-rpts      5_________________)   (__________________WD 6__________________)   (____________

Query     1201 ALSSASPSDPATTCGILSGVVDGSPFILTGSSDQRIRYWDITNPKNSSLKVPAANDNLADVAFNYGARLIDGSQVIEEQI 1280
WD40-rpts      ____________WD 7_______________________)                                        

Query     1281 ISMASTGDSQQLRSSTEENPRSGPDMPTASHHDAITDLLMCKDKGQIYIASASRNGVIKLWK 1342
WD40-rpts           (__________________________WD 8_________________________)

8 WD40-repeats found in QUERY=FBpp0081466 (Len=1342):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   832-870      4.09  283.81  0.00928       20.0%     24.09
  WD 2:  Seg 19   957-996      6.50  383.17  0.00043       37.5%     54.93
  WD 3:  Seg 23  1006-1044     6.11  366.95  0.00071       15.0%     49.29
  WD 4:  Seg 27  1056-1095     3.58  262.66  0.01783       20.0%     41.32
  WD 5:  Seg 30  1099-1139     5.91  358.77  0.00091       22.5%     51.23
  WD 6:  Seg 34  1143-1184     3.69  267.14  0.01553       12.5%     52.20
  WD 7:  Seg 38  1188-1240     5.34  335.27  0.00189       25.0%     52.21
  WD 8:  Seg 45  1286-1342     5.00  321.35  0.00290       27.5%     35.60

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  832-870    -ACHEY---------------PLADKA--SKMPLD-NRSS--EG---PT--------------LASPASDAAITPLG
   WD 2  957-996    -GTLVA---------------HLHEHS--ESVIKLASLRP--HG---SL--------------FASGSIDGTVRLWD
   WD 3 1006-1044   -VNKSR---------------QVYSAN--TPIYAL-AACD--SG---QS--------------LAVGGKDGSMLMMR
   WD 4 1056-1095   QA---L---------------NQNDHK--DGPVVD-MHAY--DQATQSV--------------IVYATLYGGIVAWD
   WD 5 1099-1139   -QHSAW---------------RLQNELRHGVITTI-CADP--TG---SW--------------LATGTSGGKHICWD
   WD 6 1143-1184   -RLPIA---------------EIKHPA-DSWIRKV-ACHPTEPS---YL--------------ISASQSNNEVSVWN
   WD 7 1188-1240   -GQRQT---------------VLWASP--VAALSS-ASPS--DP---ATTCGILSGVVDGSPFILTGSSDQRIRYWD
   WD 8 1286-1342   TGDSQQLRSSTEENPRSGPDMPTASHH--DAITDL-LMCK--DK---GQ------------IYIASASRNGVIKLWK

   WD40 Template    TGECLR---------------TLSGHT--SGVTSV-SFSP--DG---KR--------------LVSGSEDGTIKVWD