Input parameters:
Query = FBpp0081667 (Len=443)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0081667, Len=443):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAGNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGDKGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHEPE 80
WD40-rpts (_________________WD 1________________) (____
Query 81 FDYLKSLEIEEKINKIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQNVTALRVPSVKQIPLL 160
WD40-rpts ________________WD 2___________________)(__________________WD 3_________________
Query 161 VEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFV 240
WD40-rpts ) (________________WD 4________________) (_________________WD 5_____
Query 241 YSSSKGTIRLCDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIETY 320
WD40-rpts ___________) (__________________WD 6__________________)
Query 321 PVHEYLRAKLCSLYENDCIFDKFECCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKR 400
WD40-rpts (_____________________WD 7____________________) (_________________WD 8_________
Query 401 KKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF 443
WD40-rpts _______)
8 WD40-repeats found in QUERY=FBpp0081667 (Len=443):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 15-53 7.87 439.86 7.3e-05 22.5% 37.26
WD 2: Seg 6 76-120 4.21 288.64 0.00800 12.5% 42.10
WD 3: Seg 10 121-161 4.68 308.00 0.00439 12.5% 18.86
WD 4: Seg 12 164-201 6.49 382.93 0.00043 22.5% 50.84
WD 5: Seg 17 214-252 6.50 383.23 0.00043 25.0% 40.27
WD 6: Seg 21 268-309 6.53 384.55 0.00041 30.0% 42.05
WD 7: Seg 25 321-367 5.39 337.47 0.00176 12.5% 45.47
WD 8: Seg 29 370-408 5.36 335.89 0.00185 12.5% 19.98
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 15-53 KG--------ALDDD---VT-DADIISCVEFNH--DGELLATGDKGGRVVIFQ
WD 2 76-120 SHE-------PEFDYLKSLE-IEEKINKIRWLQQKNPVHFLLSTNDKTVKLWK
WD 3 121-161 VSE-------RDKSF---GGYNTKEENGLIRDP--QNVTALRVPSVKQIPLLV
WD 4 164-201 -SP-------RRTFA---NA-HTYHINSISVNS--DQETFLS-ADDLRINLWH
WD 5 214-252 IKP---------TNM---EE-LTEVITAAEFHP-TECNVFVYSSSKGTIRLCD
WD 6 268-309 EPE----NPTNRSFF---SE-IISSISDVKLSN--SGRYMISRD-YLSIKVWD
WD 7 321-367 PVHEYLRAKLCSLYE---ND-CIFDKFECCWNG--KDSSIMTGSYNNFFRVFD
WD 8 370-408 -SK-------KDVTL---EA-SRDIIKPKTVLK--PRKVCTGGKRKKDEISVD
WD40 Template TGE-------CLRTL---SG-HTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD