Accession: FBpp0081670 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = FBpp0081670 (Len=443)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0081670, Len=443):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGDKGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHEPE 80  
WD40-rpts                    (_________________WD 1________________)                      (____

Query       81 FDYLKSLEIEEKINKIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQNVTALRVPSVKQIPLL 160 
WD40-rpts      ________________WD 2___________________)(__________________WD 3_________________

Query      161 VEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFV 240 
WD40-rpts      )  (________________WD 4________________)            (_________________WD 5_____

Query      241 YSSSKGTIRLCDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIETY 320 
WD40-rpts      ___________)               (__________________WD 6__________________)           

Query      321 PVHEYLRAKLCSLYENDCIFDKFECCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKR 400 
WD40-rpts      (_____________________WD 7____________________)  (_________________WD 8_________

Query      401 KKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF 443 
WD40-rpts      _______)

8 WD40-repeats found in QUERY=FBpp0081670 (Len=443):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53       7.87  439.86  7.3e-05       22.5%     37.26
  WD 2:  Seg  6    76-120      4.21  288.64  0.00800       12.5%     42.10
  WD 3:  Seg 10   121-161      4.68  308.00  0.00439       12.5%     18.86
  WD 4:  Seg 12   164-201      6.49  382.93  0.00043       22.5%     50.84
  WD 5:  Seg 17   214-252      6.50  383.23  0.00043       25.0%     40.27
  WD 6:  Seg 21   268-309      6.53  384.55  0.00041       30.0%     42.05
  WD 7:  Seg 25   321-367      5.39  337.47  0.00176       12.5%     45.47
  WD 8:  Seg 29   370-408      5.36  335.89  0.00185       12.5%     19.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-53     KG--------ALDDD---VT-DADIISCVEFNH--DGELLATGDKGGRVVIFQ
   WD 2   76-120    SHE-------PEFDYLKSLE-IEEKINKIRWLQQKNPVHFLLSTNDKTVKLWK
   WD 3  121-161    VSE-------RDKSF---GGYNTKEENGLIRDP--QNVTALRVPSVKQIPLLV
   WD 4  164-201    -SP-------RRTFA---NA-HTYHINSISVNS--DQETFLS-ADDLRINLWH
   WD 5  214-252    IKP---------TNM---EE-LTEVITAAEFHP-TECNVFVYSSSKGTIRLCD
   WD 6  268-309    EPE----NPTNRSFF---SE-IISSISDVKLSN--SGRYMISRD-YLSIKVWD
   WD 7  321-367    PVHEYLRAKLCSLYE---ND-CIFDKFECCWNG--KDSSIMTGSYNNFFRVFD
   WD 8  370-408    -SK-------KDVTL---EA-SRDIIKPKTVLK--PRKVCTGGKRKKDEISVD

   WD40 Template    TGE-------CLRTL---SG-HTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD