Input parameters:

  Query = FBpp0081896 (Len=1252)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0081896, Len=1252):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRNLKLRYCKELNAVAHPQHLLLQPELNGGASDIYFVVADNKIYAVQESGDVRLKVIADLPDIVGVEFLQLDNAICVASG 80  
WD40-rpts                                                       (_________________WD 1_________

Query       81 AGEVILVDPQTGATSEGTFCDVGIESMAWSPNQEVVAFVTRTHNVVLMTSTFDVIAEQPLDAELDPDQQFVNVGWGKKET 160 
WD40-rpts      _______)  (_________________WD 2________________)                               

Query      161 QFHGSEGKQAAKQKESDSTFIRDEQELNQDVSISWRGDGEFFVVSYVAAQLGRTFKVYDSEGKLNHTAEKSANLKDSVVW 240 
WD40-rpts                                                                   (__________________

Query      241 RPTGNWIAVPQQFPNKSTIALFEKNGLRHRELVLPFDLQEEPVVQLRWSEDSDILAIRTCAKEEQRVYLYTIGNYHWYLK 320 
WD40-rpts      WD 3__________________)      (__________________WD 4__________________)         

Query      321 QVLIFEQADPLALLHWDTRCGAEHTLHVLKESGKHLVYRWAFAVDRNNSIVGVIDGKRLLLTDFDEAIVPPPMSKIVLKF 400 
WD40-rpts                                                                                      

Query      401 ETYINAFISHGTSLWVYTCDRKIYLNEHIHTLGKELQKPIMLMPDAELSGLHLANLTHFSPHYLLATHSSAGSTRLLLLS 480 
WD40-rpts                                                                                      

Query      481 YKDNDNKPGEWFYRVHSSVRINGLVNAVAVAPYAMNEFYVQTVNNGHTYEVSLKADKTLKVERSYVQLHEPADQIDWVIV 560 
WD40-rpts                                                                                      

Query      561 KGCIWDGYTGALVTLRNQHLLHIDGYRIGEDVTSFCVVTNYLVYTQLNAMHFVQLDDRRQVASRNIERGAKIVTAVARKA 640 
WD40-rpts                                                                                      

Query      641 RVVLQLPRGNLEAICPRVLVLELVGDLLERGKYQKAIEMSRKQRINLNIIFDHDVKRFVSSVGAFLNDINEPQWLCLFLS 720 
WD40-rpts                                                                                      

Query      721 ELQNEDFTKGMYSSNYDASKQTYPSDYRVDQKVEYVCRLLEQQMNRFVSRFRLPLITAYVKLGCLEMALQVIWKEQQEDA 800 
WD40-rpts                                                                                      

Query      801 SLADQLLQHLLYLVDVNDLYNVALGTYDFGLVLFVAQKSQKDPKEFLPYLNDLKALPIDYRKFRIDDHLKRYTSALSHLA 880 
WD40-rpts                                                                                      

Query      881 ACGEQHYEEALEYIRKHGLYTDGLAFYREHIEFQKNIYVAYADHLRAIAKLDNASLMYERGGQLQQALLSAKHTLDWQRV 960 
WD40-rpts                                                                                      

Query      961 LVLAKKLSEPLDQVAQSLVGPLQQQGRHMEAYELVKEHCQDRKRQFDVLLEGHLYSRAIYEAGLEDDDVSEKIAPALLAY 1040
WD40-rpts                                                                                      

Query     1041 GVQLESSLQADLQLFLDYKQRLLDIRRNQAKSGEGYIDTDVNLKEVDLLSDTTSLHSSQYSGTSRRTGKTFRSSKNRRKH 1120
WD40-rpts                                                                                      

Query     1121 ERKLFSLKPGNPFEDIALIDALHNHVTKIAQQQQPVRDTCKALLQLANAADADPLAAALQREFKTLLQAVDAALDEIWTP 1200
WD40-rpts                                                                                      

Query     1201 ELRGNGLMADHLTGPNVDYLALQKEQRYALLSPLKRFKPQLIMMDWQHEILQ 1252
WD40-rpts                                                          

4 WD40-repeats found in QUERY=FBpp0081896 (Len=1252):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    50-88       4.68  307.86  0.00441       15.0%     49.58
  WD 2:  Seg  7    91-129      4.91  317.67  0.00325       10.0%     50.19
  WD 3:  Seg 15   222-263      4.08  283.05  0.00951       20.0%     37.95
  WD 4:  Seg 19   270-311      3.24  248.35  0.02766       15.0%     35.51

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   50-88     GDVRLKVIADLPDIVGVEFLQLDNAIC---VA---SGAGEVILVD
   WD 2   91-129    TGATSEGTFCDVGIESMAWSPNQEVVA---FV---TRTHNVVLMT
   WD 3  222-263    GKLNHTAEKSANLKDSVVWRPTGNWIA---VPQQFPNKSTIALFE
   WD 4  270-311    RELVLPFDLQEEPVVQLRWSEDSDILAIRTCA---KEEQRVYLYT

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLV---SG---SEDGTIKVWD