Input parameters:

  Query = FBpp0082028 (Len=459)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0082028, Len=459):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFNGMVRTIRDSVVGTYPSCHVSSRLEERRAKQRAMRQERRRKPDKPDDFVTYEDSGSDEETPQQQEEVLNTSYNLCDYL 80  
WD40-rpts                                                                                      

Query       81 RSRESGLRDRRSVNVEYTSRYVLTHDMLRETQISLGYINKVFCSKWLSSRQVVFGTKCNKLLVYDVNMRRVDAIPTLSNS 160 
WD40-rpts                                 (________________WD 1________________)            (__

Query      161 RANHPEVQGGLHAIELSPSRSFLATGARNSSDIAVYRLPTLDPVCVGEGGHRDLIMGMCWLDDQFLVSGSKDSRMALWRI 240 
WD40-rpts      _______________WD 2_________________)    (________________WD 3________________) 

Query      241 NEDHMEFPDGGEEACPTFATIHPLSVKEVRTAQRIRSLCFNKEFKEIAALSLNGYIHIFNAETFKQTLSRKLPNCQDNVS 320 
WD40-rpts                           (_________________WD 4________________)(__________________W

Query      321 IAYHSDGLYAVGCRSYTILLDARTLQTIKKITSRYSGCGIRATSFEGNLLTVGTGLGMLLFYDIRAGKYLESSVNASRTV 400 
WD40-rpts      D 5_________________)   (_________________WD 6________________)(________________

Query      401 ALKCSKGIVYPEDEMDGFQQVKYVPAIYTHCYDSTRMRLFAAGGPLPATLVGNYAGVWQ 459 
WD40-rpts      _WD 7________________)                                     

7 WD40-repeats found in QUERY=FBpp0082028 (Len=459):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   108-145      5.27  332.41  0.00206       15.0%     51.32
  WD 2:  Seg  9   158-197      6.34  376.38  0.00053       17.5%     40.02
  WD 3:  Seg 12   202-239      7.00  403.86  0.00022       25.0%     50.40
  WD 4:  Seg 18   262-300      7.46  422.93  0.00012       15.0%     47.60
  WD 5:  Seg 21   301-341      4.02  280.76  0.01020       20.0%     47.57
  WD 6:  Seg 25   345-383      8.59  469.31  2.9e-05       20.0%     57.30
  WD 7:  Seg 28   384-422      3.34  252.58  0.02430        7.5%     19.00

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  108-145    -LRETQISL---GYINKVFCSKWLSS-RQVVFGTKCNK-LLVYD
   WD 2  158-197    -SNSRANHP---EVQGGLHAIELSPSRSFLATGARNSSDIAVYR
   WD 3  202-239    -DPVCVGEG---GHRDLIMGMCWL-DDQFLVSGSKDSR-MALWR
   WD 4  262-300    -HPLSVKEV---RTAQRIRSLCFNKEFKEIAALSLNGY-IHIFN
   WD 5  301-341    AETFKQTLSRKLPNCQDNVSIAYHSDGL-YAVGCRS-Y-TILLD
   WD 6  345-383    -LQTIKKIT---SRYSGCGIRATSFEGNLLTVGTGLGM-LLFYD
   WD 7  384-422    -IRAGKYLE---SSVNASRTVALKCSKGIVYPEDEMDG-FQQVK

   WD40 Template    TGECLRTLS---GHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD