Input parameters:

  Query = FBpp0082231 (Len=922)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0082231, Len=922):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTHLRSEDKPQSEERKSVFKESSCIFRRNRALGYVSNQVPAVTRYVQRRRDTLLITCIGRSFQVYTANHFRLLHVSGLHP 80  
WD40-rpts                               (__________________WD 1_________________)   (__________

Query       81 DEITALATDRLHTYTASNKCIYAWRAGKHIRHVYRGHQKDVHLLLPFGSSLIAIDRQNVLKVWNISTEDVYLEVPFRSEE 160 
WD40-rpts      _____WD 2_______________)(_________________WD 3________________)(_______________

Query      161 FQITAVTHPPTYINKIVLGSQQGQLKILNIKKNSVVCTLSHHDSRITCIEPSPALDVVAVGHGDGTIILLNLKFDEVLMS 240 
WD40-rpts      _____WD 4___________________)   (_________________WD 5________________)   (_____

Query      241 FQQDWGQVTNLSFRTDGPPILVSACSNGYMAFWNLEERKLAGQLQAHEESVTTAICLPSEPVVFTTSPDNSMRMFVFDMP 320 
WD40-rpts      ____________WD 6_________________)   (_________________WD 7________________)    

Query      321 DGGARQLRIREGHTKPPFCIRYHGSSGVSILSSGEDSTMRVFSTISESLNKSMGRATYNPKATKKKNRFEHDKFGMPPIL 400 
WD40-rpts         (_________________WD 8_________________)                                     

Query      401 EFTSDTAREKEWDNIAAIHAGVIQTTTWSFGKNRMGEHRLVPKQFQNSNRTNFQNETTCIVLTHCGNFVIIGYSSGDIER 480 
WD40-rpts                                                 (_________________WD 9_______________

Query      481 FNIQSGLHRATYGSPAHKMAVRGLASDNLNQTVISGCSEGLLKFWSFKGKVDKPLATLRLADGIALIRQHRESSMLAIGL 560 
WD40-rpts      _)(___________________WD10___________________)(___________________WD11__________

Query      561 ETFKIFVVDMHTRVIVRKFVGHTAKLNDLTFSPDSRWLITAAMDSTIKVWDIPSSYMVDHFRVEAPCVSLSMSPNGDFLA 640 
WD40-rpts      ________)   (_________________WD12________________)   (_________________WD13____

Query      641 TAHVGLLGIYLWANKTLFNQISLRSIDPLEPAPYVGLPTNVCDAMELEDGMKELEIDEEDESKLGELVDTKYETPTQLSE 720 
WD40-rpts      ____________)                                                                   

Query      721 ELITLSGLAASRWQNLLDLELIKQRNKPKAPPKAPKQAPFFLPTVSGLELRFDVENGQKEEDESRIRKASTLNNLTAFGQ 800 
WD40-rpts                                                                                      

Query      801 LLEETADSLDFASAVAHLTQLGPSMVDFEIKSLHPEAGGTLLAMLQFLKLVKFMFGTNLNFELAQSYLSVFLRSHGLGLT 880 
WD40-rpts                                                                                      

Query      881 EFPDLVKELRTVSQVQQEAWQRVEEKLIYGTGVVAALRNFAH 922 
WD40-rpts                                                

13 WD40-repeats found in QUERY=FBpp0082231 (Len=922):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    26-66       2.84  231.89  0.04569        5.0%     51.10
  WD 2:  Seg  5    70-105      3.05  240.75  0.03490       12.5%     51.20
  WD 3:  Seg  9   106-144      5.57  344.81  0.00140       27.5%     48.62
  WD 4:  Seg 13   145-189      4.63  305.94  0.00468       20.0%     56.21
  WD 5:  Seg 17   193-231      7.31  416.66  0.00015       32.5%     59.91
  WD 6:  Seg 21   235-274      6.79  395.15  0.00029       32.5%     57.68
  WD 7:  Seg 25   278-316      7.33  417.27  0.00015       17.5%     54.75
  WD 8:  Seg 29   324-363      6.59  387.05  0.00038       27.5%     52.43
  WD 9:  Seg 38   444-482      6.31  375.17  0.00055       12.5%     47.90
  WD10:  Seg 41   483-526      6.79  395.16  0.00029       20.0%     50.07
  WD11:  Seg 45   527-569      4.97  319.91  0.00304       17.5%     56.04
  WD12:  Seg 49   573-611      9.68  514.43  7.2e-06       40.0%     58.54
  WD13:  Seg 53   615-653      4.01  280.45  0.01030       20.0%     56.30

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-66     FR---R----NRA----LGYVSNQVPAVTRYV-QRRR-D-TLLITCIGRS-FQVYT
   WD 2   70-105    -F---R----LLH----V-SGLHPDEITALAT-DRLH-----TYTASNKC-IYAWR
   WD 3  106-144    AG---K----HIR---HV-YRGHQKDVHLL---LPFG-S-SLIAIDRQNV-LKVWN
   WD 4  145-189    IS---TEDVYLEV----P-FRSEEFQITAVTH-PPTYIN-KIVLGSQQGQ-LKILN
   WD 5  193-231    -N---S----VVC----T-LSHHDSRITCIEP-SPAL-D-VVAVGHGDGT-IILLN
   WD 6  235-274    -D---E----VLM----S-FQQDWGQVTNLSF-RTDG-PPILVSACSNGY-MAFWN
   WD 7  278-316    -R---K----LAG----Q-LQAHEESVTTAIC-LPSE-P-VVFTTSPDNS-MRMFV
   WD 8  324-363    -A---R----QLR----I-REGHTKPPFCIRYHGSSG-V-SILSSGEDST-MRVFS
   WD 9  444-482    -Q---F----QNS----N-RTNFQNETTCIVL-THCG-N-FVIIGYSSGD-IERFN
   WD10  483-526    IQ---S----GLHRATYG-SPAHKMAVRGLAS-DNLN-Q-TVISGCSEGL-LKFWS
   WD11  527-569    FKGKVD----KPL----A-TLRLADGIALIRQ-HRES-S-MLAIGLETFK-IFVVD
   WD12  573-611    -R---V----IVR----K-FVGHTAKLNDLTF-SPDS-R-WLITAAMDST-IKVWD
   WD13  615-653    -S---Y----MVD----H-FRVEAP-CVSLSM-SPNG-D-FLATAHVGLLGIYLWA

   WD40 Template    TG---E----CLR----T-LSGHTSGVTSVSF-SPDG-K-RLVSGSEDGT-IKVWD