Input parameters:

  Query = FBpp0082511 (Len=430)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0082511, Len=430):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVDRSDNAAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQ 80  
WD40-rpts                                                                                      

Query       81 NHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTK 160 
WD40-rpts                                                   (_____________WD 1_____________)   

Query      161 HPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 240 
WD40-rpts                (_________________WD 2_________________)(______________________WD 3___

Query      241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320 
WD40-rpts      ___________________)      (_________________WD 4_________________)(_____________

Query      321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400 
WD40-rpts      ______WD 5___________________)(__________________________WD 6___________________

Query      401 NIMQVWQMAENVYNDEEPEIPASELETNTA 430 
WD40-rpts      ______)                       

6 WD40-repeats found in QUERY=FBpp0082511 (Len=430):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   126-157      3.24  248.47  0.02756       12.5%     42.52
  WD 2:  Seg  8   171-210      5.89  357.97  0.00093       32.5%     51.84
  WD 3:  Seg 12   211-260      5.79  353.89  0.00106       25.0%     46.98
  WD 4:  Seg 15   267-306      7.30  416.34  0.00015       35.0%     53.12
  WD 5:  Seg 19   307-350      6.77  394.13  0.00030       27.5%     51.22
  WD 6:  Seg 23   351-407      5.56  344.20  0.00143       32.5%     55.92

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  126-157    ----------------------------NHEGEVNRARYMPQN-AC-V-I-ATKTPSSDVLVFD
   WD 2  171-210    -C----------------QP---DLRLRGHQKEGYGLSWNP-NLNG-Y-L-LSASDDHTICLWD
   WD 3  211-260    IN-------ATPKEHRVIDA---KNIFTGHTAVVEDVAWHL-L-HE-S-LFGSVADDQKLMIWD
   WD 4  267-306    -S----------------KP---SHTVDAHTAEVNCLSFNP-Y-SEFI-L-ATGSADKTVALWD
   WD 5  307-350    LR----------------NLKLKLHSFESHKDEIFQVQWSP-H-NE-TIL-ASSGTDRRLHVWD
   WD 6  351-407    LSKIGEEQSTEDAEDGPPEL---LFIHGGHTAKISDFSWNP-N-EPWI-I-CSVSEDNIMQVWQ

   WD40 Template    TG----------------EC---LRTLSGHTSGVTSVSFSP-D-GK-R-L-VSGSEDGTIKVWD