Input parameters:

  Query = FBpp0082689 (Len=1732)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0082689, Len=1732):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDDRTIDSIFLGSLESLPPVSSKIVRIFTSSTFTDTTMERNTLMAKCYPRIKDYCREKHGLEFQVVDMRWGVRDEATDDH 80  
WD40-rpts                                                                                      

Query       81 MTTELCMREIKNCQRLSMGPNFIVFLGQKYGYRPIPTYIVSSELALICEELTSMGVDRAILDLWYKKDSNAVPPISVLQP 160 
WD40-rpts                                                                                      

Query      161 ISSILINFNNKRVPKLQAEDQAVWWDTLNKMQKLLRKAAASLGASNKMSKEDVHNYFMSVTEREVINGILNVKNTKNHCL 240 
WD40-rpts                                                                                      

Query      241 SYVRYINNINLQNLKKASLFVDIINRSLDTESAKLLSDLRDVRLPAKIEAVNAQKYTVEWIGREGLDIETHEEYLNHFIS 320 
WD40-rpts                                                                                      

Query      321 HFYKNVVKLVDRAMRKEDSSAQGQIVTEILQHLHACNNSVKIFYGREESCERIKRYMLGDSDKPLVLFGDGGCGKTSLLS 400 
WD40-rpts                                                                                      

Query      401 KSVSLVATEWFAHVRPINVIRFLGTTPDSSALTATLISICQQISYNYMLPFENIPDDLVPLTAHFKQLLTYASPTQPLTI 480 
WD40-rpts                                                                                      

Query      481 YLDSVDQLTGTQDSNKVSWIPTRLPPHCKIIISCANEPANPTVSHEYHVLCKMIDVEENFIEVTALGEDLAMNVIKMWMK 560 
WD40-rpts                                                                                      

Query      561 TACRDLNNYQWRLVANAISKCSLPIFVKLVFAEICRWRSYTRPQETHLANTVMDSIMLLFERVEKQHGRILVFHALAYIT 640 
WD40-rpts                                                                                      

Query      641 ASKSGLSESELEDLISLDDKVLDDVYQYHLPPTRRIPPLLWTRIRNDLPNYLSEREADGVNVMNWYHRQFRDTAKERYFK 720 
WD40-rpts                                                                                      

Query      721 NMNMAIYFHSMIADYYLGIWGGGVPKPFKFTEIQRHRFGLADKEGSADRKVPIQPLVFSSKDGLSKRYNLRKFGELPFHF 800 
WD40-rpts                                                                                      

Query      801 VRSRRFKDLFEHVLFNYDWLHAKLSSCPLQAVLADFEDASSNTDDKEAKRELMLVSDALRLGGAILAIYPNMLAPQLVGR 880 
WD40-rpts                                                                                      

Query      881 LLPEIGGNPNIKMLLRACDRSGPKDCALIPVNHCLHTPGGPLKYSLEGHQFAVFAFCLTSDMRYMVSISTHFITFDLSTS 960 
WD40-rpts                                             (_________________WD 1________________)(_

Query      961 DLTRDVNPGIEGIMQQLVLSPDNKWAAAYSNNNQTVLLNMLSSEFVVINSPFEESHGPVSGLYLLNQNLFITCKLRWAQF 1040
WD40-rpts      _________________WD 2_________________)                                         

Query     1041 DTRGNLVDTFDVPGENKDWEILTMEFFNPADYNVVFWSGSINDMRLRLDSCRGGHYSNCQLLFSAMVMNKARTRAYGCAN 1120
WD40-rpts                                                        (________________WD 3_________

Query     1121 EENFEVSVFDFIEDEVTGDICWTLVESLPRFENDDKEMLLQLRLDQHDRMLLGTAGKGFVIWDFGSKDKDAAEECRLREG 1200
WD40-rpts      _______)                                                                        

Query     1201 ALYLALPHGVRNITTRIMQSNSIMVSSKLDYAVAGVRKNLYVWCLQSGQLAKVLDAHFGRIIQLEPLTIGNWNNLVTSSI 1280
WD40-rpts            (________________WD 4________________)   (__________________WD 5__________

Query     1281 DRSVKVWNINNIFEKVHVIDRHELQIDDISLSEVDMAVTVTRSCVGVWETRSGRLLAKLADSPLGAIVTHAEITPDGRYI 1360
WD40-rpts      _______)    (________________WD 6_______________)   (_________________WD 7______

Query     1361 ISSETGKFLVWNRVSEQVVFRDDQPGIQQITLMDYGYKVLTVSVPNINQRDILAAAAGGSADEANRLTAITTMRSVPEGS 1440
WD40-rpts      ___________)             (___________________WD 8___________________)           

Query     1441 IFFRFEFPIRMITGMPFRQSVITADNAYIVVVTVDKSNKDCLGVYSATNGAFVSKVLLKGCSIKEVISLVPMPHKANQVA 1520
WD40-rpts           (__________________WD 9_________________)   (__________________WD10________

Query     1521 VISSEKGSVMDIKTKKHVRSIAKWGGSITRDGKCGLYAPTRGGLEMLELRKGTTVKTFIPKVAEGVFSVICIFTENDEYV 1600
WD40-rpts      __________)   (______________WD11______________)   (___________________WD12_____

Query     1601 AYYHSGRKTIRVFRTADTEMIANYRLQAELTAIKSSKDGRAIVLGTVDGCMSVLAIVDPKKEEMNEYLNDLPSRDENWKA 1680
WD40-rpts      _____________)   (________________WD13________________)                         

Query     1681 KLAKMKARVGFKAAIRVATISSRYAKTSKGGEDGEEELLTEITEDIVVPVAD 1732
WD40-rpts                                                          

13 WD40-repeats found in QUERY=FBpp0082689 (Len=1732):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   920-958      4.22  289.09  0.00789       22.5%     42.16
  WD 2:  Seg 16   959-999      7.75  434.93  8.6e-05       20.0%     54.03
  WD 3:  Seg 28  1091-1128     3.17  245.64  0.03005        7.5%     39.05
  WD 4:  Seg 38  1207-1244     6.33  376.07  0.00053       17.5%     49.68
  WD 5:  Seg 42  1248-1288     7.30  416.20  0.00015       27.5%     53.11
  WD 6:  Seg 46  1293-1329     5.56  344.19  0.00143       15.0%     46.84
  WD 7:  Seg 50  1333-1372     5.74  351.80  0.00113       30.0%     55.52
  WD 8:  Seg 55  1386-1429     5.54  343.50  0.00146       25.0%     42.75
  WD 9:  Seg 61  1446-1486     2.84  231.81  0.04580       10.0%     32.10
  WD10:  Seg 65  1490-1531     5.36  336.01  0.00184       17.5%     54.26
  WD11:  Seg 69  1535-1568     4.56  302.89  0.00515       15.0%     46.90
  WD12:  Seg 73  1572-1614     5.99  361.93  0.00082       20.0%     54.35
  WD13:  Seg 77  1618-1655     6.38  378.07  0.00050       25.0%     54.51

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  920-958    -GPLKYSLE-GH---QF----A--VFAFCLTSDM--RYMV----S-----ISTHFITFDLS
   WD 2  959-999    TSDLTRDVNPGI---EG----I--MQQLVLSPDN--KWAA----A-----YSNNNQTVLLN
   WD 3 1091-1128   CRG--GHYS-NC---QL----L--FSAMVMNKAR--TRAY----G-----CANEENFEVSV
   WD 4 1207-1244   -PHGVRNIT-TR---IM----Q--SNSIMVSSKL--DYAV----A-----GV-RKNLYVWC
   WD 5 1248-1288   -GQLAKVLD-AH---FG----R--IIQLEPLTIGNWNNLV----T-----SSIDRSVKVWN
   WD 6 1293-1329   -FEKVHVID-RH---EL----Q--IDDISLSEVD----MA----V-----TVTRSCVGVWE
   WD 7 1333-1372   -GRLLAKLA-DS---PL----GAIVTHAEITPDG--RYII----S-----SETG-KFLVWN
   WD 8 1386-1429   -GIQQITLM-DY---GY----K--VLTVSVPNIN--QRDI----LAAAAGGSADEANRLTA
   WD 9 1446-1486   EF---PIRM-IT---GM----P--FRQSVITADN--AYIVVVTVD-----KSNKDCLGVYS
   WD10 1490-1531   -GAFVSKVL-LKGCSIK----E--VISLVPMPHK--ANQV----A-----VISSEKGSVMD
   WD11 1535-1568   -KKHVRSIA-KW--------------GGSITRDG--KCGL----Y-----APTRGGLEMLE
   WD12 1572-1614   -GTTVKTFI-PK---VAEGVFS--VICIFTENDE--YVAY----Y-----HSGRKTIRVFR
   WD13 1618-1655   -TEMIANYR-LQ---AE-------LTAIKSSKDG--RAIV----L-----GTVDGCMSVLA

   WD40 Template    TGECLRTLS-GH---TS----G--VTSVSFSPDG--KRLV----S-----GSEDGTIKVWD