Accession: FBpp0082910 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = FBpp0082910 (Len=1577)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0082910, Len=1577):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAPQQQRGESGGGAPPDTGRDSASQPAKSSTASGSGHSATCSHSPSSKNRGHFNNRVHSNHNQRQTPYPKSNYENRGRS 80  
WD40-rpts                                                                                      

Query       81 DTRSSNQERQERDYTKRTDFRERNTRFSDERHSGRYSDYHRRNHYHRFKSWGSEGRSYRRDKGARDLSKSRYDNDASGSS 160 
WD40-rpts                                                                                      

Query      161 LIRGASEIRRKNGHNCDPNSDASKTENSEDIQSCINHYQTEENKIDTEQSKDQGANRTSPTEQLSDISKQSNPIALEGDQ 240 
WD40-rpts                                                                                      

Query      241 NKKTNELKESSCSSKPSREINETSKASQFPDQRSKEQSSGEELNVSESSDNHSGAQASQSIPRIQVRPLTKLLRQELFAV 320 
WD40-rpts                                                                                      

Query      321 TQENRLIKSPPPSASPASPSRLVFTPNLRNRRRTVSNCIYNAGSFDQTAESEAVFNDRIASMDKESLKYIINNGDTIFEP 400 
WD40-rpts                                                                                      

Query      401 HLQLQARRRIRDEIRRQLKTIELEKPKDCLVTDLVEDEIVDSIKLPAFLLEEIGKCFGIDISEGQTTKDSAAEREDTTRV 480 
WD40-rpts                                                                                      

Query      481 NAESPVQDTEEETKRACNGVESLKDIKTEATADDSNQCTKFRNLENEIDINDNHHQSEDDELSKPLSVLPKDSEDCSVKS 560 
WD40-rpts                                                                                      

Query      561 NGVSKKVLQENNKKKTFNRDTKVNGNKAMNPPQETVIETLEHSDSINRSITNPKTADELKSFAGIEWEVNSKSKHSNPSQ 640 
WD40-rpts                                                                                      

Query      641 SAFIKTNKSNNIETALIDSLSGISKPCKMEIKRESSSSPISVSSLPSNDVIDLLSSSDEELEEHAVVDMDIDEHEGDIEN 720 
WD40-rpts                                                                                      

Query      721 QKIFKTLEALKQSDDVVDSDDSTSSQSSSKSTKRRRRLKLQNDAENVVDSFEKLILPHLREALSDRYRRQHSSSLQSRLH 800 
WD40-rpts                                                                                      

Query      801 FISCVVTSSEHNAQTFSKIEVAKMQMNLKAADNRQAIEFLLKEIVNVVSLQKQRRREQDEEQKLANLLSPKKTAFTSDET 880 
WD40-rpts                                                                                      

Query      881 CKASTLCPNQHGFIPPTAQDSSPVTSPCQKPPSSPPSQQSPSSATAQQSSPMALQKTQSCPARQSSTSIQENPMDSSGQW 960 
WD40-rpts                                                                                      

Query      961 RGSASHKTQSSPARQTTPVGDVFENPSPNQGNPPSSAKLESFNVGFPFLSMDPTLYNYSRLASGSKINEPLGKSDDMMEQ 1040
WD40-rpts                                                                                      

Query     1041 HLVEIERELIKHENRYSFLDDIIIKFQKEKSEVGMVILELKSRKFLIINSMASRNQATSAQVADSKSKPHEAETAQESTH 1120
WD40-rpts                                                                                      

Query     1121 EDSFSKGGIARRTRSRLRRTVLVLAPKRQVRVQKRVSKKPKSFKLVEKSHEEIAEQETNKMDSKATNQLNINEELLKVSA 1200
WD40-rpts                                                                                      

Query     1201 GDQVSDYSPTAKLAQSRLSKPSIAVNPTHQPLAIIPPLPPPPPPPEPICHMSYEASSSFLKEPLHEPGHQLSELNSEDKT 1280
WD40-rpts                                                                                      

Query     1281 RQGFVTKGKLQNVGSPITQIKIYRDNVIAAAEDGDIYVFHLVTHKLEQKITKHSEAITNMFLSEKDSILYTTSADGFFKK 1360
WD40-rpts                                                 (_________________WD 1_______________

Query     1361 SSLLNLERVFETVYLKEPLQSMDVAWGLAFIGSRWGQISTFNVVTNKVVEKPLVSTGQSIIAIKATKEGVRKILVLGCKG 1440
WD40-rpts      _)   (________________WD 2_______________)   (__________________WD 3____________

Query     1441 NFVQMHDAGNGLLLRHVFIAEGLNIYSLLLDEGHIYCGTQKNELYQLEFVSGNLVTKFSCGNGAVAVAAYGERYLLVGCY 1520
WD40-rpts      ______)(__________________WD 4_________________)   (________________WD 5________

Query     1521 DGYIYVLNKITGTQTGRFAGAGRMVLALSVVGDKIVTSSKDNSLAILEVPPALVNGY 1577
WD40-rpts      _______)   (________________WD 6_______________)

6 WD40-repeats found in QUERY=FBpp0082910 (Len=1577):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9  1324-1362     7.68  431.79  9.4e-05       20.0%     56.82
  WD 2:  Seg 13  1366-1402     3.81  272.17  0.01330       15.0%     54.00
  WD 3:  Seg 17  1406-1447     5.15  327.32  0.00241       17.5%     51.87
  WD 4:  Seg 21  1448-1488     3.76  270.05  0.01420       12.5%     49.26
  WD 5:  Seg 25  1492-1528     5.48  341.09  0.00157       22.5%     56.67
  WD 6:  Seg 29  1532-1568     4.65  306.82  0.00456       20.0%     55.21

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1324-1362   -HKLE---QKITKHSE-AITNMFLSEKD--SILYTTSADGFFKKSS
   WD 2 1366-1402   -LERV---FETVYLKE-PLQSMDVAWG----LAFIGSRWGQISTFN
   WD 3 1406-1447   -NKVV---EKPLVSTGQSIIAIKATKEGVRKILVLGCKGNFVQMHD
   WD 4 1448-1488   AGNGLLLRHVFIAEGL-NIYSLLL--DE--GHIYCGTQKNELYQLE
   WD 5 1492-1528   -GNLV---TKFSCGNG-AVAVAAYG--E--RYLLVGCYDGYIYVLN
   WD 6 1532-1568   -GTQT---GRFAGAGR-MVLALSVV--G--DKIVTSSKDNSLAILE

   WD40 Template    TGECL---RTLSGHTS-GVTSVSFSPDG--KRLVSGSEDGTIKVWD