Input parameters:

  Query = FBpp0082995 (Len=922)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0082995, Len=922):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGLTKQYLAYRAIDSFNIITSGRANVNFAVVDKTEGRYVAAPAAENVIVWDLRMGDRKLTLRREKFEVTSLRVSPDHLHI 80  
WD40-rpts                   (________________WD 1________________)   (_________________WD 2____

Query       81 AVGYADGMVQIFDLSSDRYYDPICTLALHKNAVSILRYDLQGMRLVSGGLDTELVVVDVVEQAGRARLSGHNAAITDAHF 160 
WD40-rpts      ____________)(____________________WD 3___________________)   (__________________

Query      161 LQRLVDESIVVSCSKDTQIKFWNLETQFCFKTIVDNRTEVWALAFIGNLMVAGAGESGMNVYRLRKHDGAITETLESAVE 240 
WD40-rpts      WD 4__________________)   (________________WD 5_______________)             (___

Query      241 GLSIDDEDTISPISVSNCGTIQRAGKGRTVNLVTDPSERVISCHGTNDLIENFYICTPDEVKKRLAKRLKKEKKVAEDEG 320 
WD40-rpts      _____________WD 6________________)                                              

Query      321 SDEAKLSTEQSLSDEIKRLESIRAKQKIKSIDVVLGQNQELRVLVSLANNSLCLYSLEASIKTRKATDPSAKLLRSLTRL 400 
WD40-rpts                             (__________________WD 7__________________)(______________

Query      401 GHQSEVRSVCFSNDSLAIGSGAGESFKFWDRDAMQCLRTVPTDYILCSKFVPGDRYVLLGMKSGKLLIVDVAAADIVEEI 480 
WD40-rpts      ______WD 8___________________)(_________________WD 9_________________)   (______

Query      481 PAHEGELWSIAILPDQKGCVTGSGDTTVKIWTFELIDAGEGAAQTKVLSLLHKNTLKLEETVLCLAVSPDMKYLAVGLLD 560 
WD40-rpts      ___________WD10________________)                    (_______________WD11________

Query      561 ATVKVFFLDTFKFYLSLYGHKLPVICLDISYDSNLIVTGSADRNVKVWGLNFGDCHRSIFAHDDSVMSVQFIPRTHMFFT 640 
WD40-rpts      ______)   (_________________WD12________________)   (_________________WD13______

Query      641 CGKDGKVKQWDGDNFEKILTLPGHIGEAYCLSVSPNGRYLVTCGSDRTLRMFERTDETIVLKDVQEEEREQMENEQLATG 720 
WD40-rpts      __________)   (_________________WD14________________)                           

Query      721 EDNTVPLLPGLKMPSRKTVGSEQSAESILECLEISKQFELEAEEKPELHPLMQALQVKNPEDFLVSTLMRIRASDLEEAL 800 
WD40-rpts                                                                                      

Query      801 LLLPFSTVCEVLERLPTLLTQRPDQLELLCRVTIFLFKVHMKPISAAKNMKPLLVKLLSMLKRDVGQLRDVLGWNLHGLA 880 
WD40-rpts                                                                                      

Query      881 LLQTEVEQRDGVQLFREATQTRKKRDKKRREASKRRLQIQMV 922 
WD40-rpts                                                

14 WD40-repeats found in QUERY=FBpp0082995 (Len=922):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    14-51       4.67  307.47  0.00447       17.5%     55.81
  WD 2:  Seg  6    55-93       8.22  454.05  4.7e-05       32.5%     58.84
  WD 3:  Seg 10    94-138      8.11  449.86  5.4e-05       32.5%     54.61
  WD 4:  Seg 14   142-183      7.39  419.93  0.00014       35.0%     56.48
  WD 5:  Seg 18   187-223      5.66  348.29  0.00126       17.5%     56.50
  WD 6:  Seg 23   237-274      3.56  261.75  0.01833       12.5%     38.69
  WD 7:  Seg 31   344-385      4.78  312.23  0.00385       15.0%     51.89
  WD 8:  Seg 35   386-430      6.50  383.13  0.00043       37.5%     51.28
  WD 9:  Seg 39   431-470      7.35  418.28  0.00014       15.0%     52.75
  WD10:  Seg 43   474-512      9.19  494.48  1.3e-05       30.0%     55.45
  WD11:  Seg 48   533-567      6.76  394.09  0.00030       27.5%     47.62
  WD12:  Seg 51   571-609      8.91  482.58  1.9e-05       32.5%     57.10
  WD13:  Seg 55   613-651      9.07  489.27  1.6e-05       35.0%     55.67
  WD14:  Seg 59   655-693      8.81  478.57  2.2e-05       32.5%     55.78

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-51     -D-----S------FNIITSGRAN--VNFAVVDKT---EGRYVAAPAAE-NVIVWD
   WD 2   55-93     -G-----D------RKLTLRREKF--EVTSLRVSP---DHLHIAVGYADGMVQIFD
   WD 3   94-138    LSSDRYYD------PICTLALHKN--AVSILRYDL---QGMRLVSGGLDTELVVVD
   WD 4  142-183    -Q-----A------GRARLSGHNA--AITDAHFLQRLVDESIVVSCSKDTQIKFWN
   WD 5  187-223    -Q-----F------CFKTIVDNRT--EVWALAFIG---N--LMVAGAGESGMNVYR
   WD 6  237-274    -S-----A------VEGLSIDDED--TISPISVSN---CGTIQRAGK-GRTVNLVT
   WD 7  344-385    AK-----Q------KIKSIDVVLGQNQELRVLVSL---ANNSLCLYSLEASIKTRK
   WD 8  386-430    AT-----DPSAKLLRSLTRLGHQS--EVRSVCFSN---DSLAIGSGA-GESFKFWD
   WD 9  431-470    RD-----A------MQCLRTVPTD--YILCSKFVP---GDRYVLLGMKSGKLLIVD
   WD10  474-512    -A-----D------IVEEIPAHEG--ELWSIAILP---DQKGCVTGSGDTTVKIWT
   WD11  533-567    ----------------KNTLKLEE--TVLCLAVSP---DMKYLAVGLLDATVKVFF
   WD12  571-609    -F-----K------FYLSLYGHKL--PVICLDISY---DSNLIVTGSADRNVKVWG
   WD13  613-651    -G-----D------CHRSIFAHDD--SVMSVQFIP---RTHMFFTCGKDGKVKQWD
   WD14  655-693    -F-----E------KILTLPGHIG--EAYCLSVSP---NGRYLVTCGSDRTLRMFE

   WD40 Template    TG-----E------CLRTLSGHTS--GVTSVSFSP---DGKRLVSGSEDGTIKVWD