Input parameters:

  Query = FBpp0082998 (Len=358)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0082998, Len=358):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSIANVSTHYISEKVSQVRWLPEELQQSERFVTGSWDMDQNFVRLWRLQSNQYVTATDSEVDQIPRCMDKVRMEDDVTAM 80  
WD40-rpts      (_____________________WD 1____________________)                        (________

Query       81 EFVDKDTLAVSCADGHLSVFNVHRAVEEDQMQRTSRSGRLHCFQRSQEPAPCTDLSVYGTDIATAGEDGCVSIVSVENVR 160 
WD40-rpts      ____WD 2____________)               (_________________WD 3________________)    (

Query      161 QVKRQIEADSMALFSICYISQQELVTANRMGVIRMLDARVATEAQPKTTFMVASQDDKSNFVSSLAKHPMQQHILLCGSE 240 
WD40-rpts      ________________WD 4________________)           (_________________WD 5__________

Query      241 EGSITVWDMRNLSYPASYLSAHKSPINEIGFHQKDPSKLFTAAEGGEVWMWSENKVLGCDYNKDGHSPWLSGDRVRSLVD 320 
WD40-rpts      _______)    (_________________WD 6_________________)                   (________

Query      321 VEGVLSNVRKSINSFDVHGSRLVCGGDTEAVYLVDNIV 358 
WD40-rpts      ___________WD 7___________________)   

7 WD40-repeats found in QUERY=FBpp0082998 (Len=358):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-47       5.18  328.49  0.00233       22.5%     39.51
  WD 2:  Seg  5    72-101      4.30  292.46  0.00711       20.0%     44.47
  WD 3:  Seg  8   117-155      7.81  437.10  8.0e-05       15.0%     49.13
  WD 4:  Seg 12   160-197      6.51  383.67  0.00042       17.5%     51.34
  WD 5:  Seg 16   209-248      7.02  404.75  0.00022       30.0%     53.34
  WD 6:  Seg 20   253-292      7.52  425.27  0.00012       25.0%     51.92
  WD 7:  Seg 25   312-355      4.79  312.52  0.00382       25.0%     45.68

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-47     MS------IANVSTHYISEKVSQVRWLPEELQQSERFVTGSWDMDQNFVRLWR
   WD 2   72-101    ---------------RMEDDVTAMEFV-----DKDTLAVSCAD---GHLSVFN
   WD 3  117-155    -S------GRLHCFQRSQEPAPCTDLSV----YGTDIATAGED---GCVSIVS
   WD 4  160-197    -R------QVKRQIEADSMALFSICYIS----QQE-LVTANRM---GVIRMLD
   WD 5  209-248    -T------FMVASQDDKSNFVSSLAKHP---MQQHILLCGSEE---GSITVWD
   WD 6  253-292    -S------YPASYLSAHKSPINEIGFHQ---KDPSKLFTAAEG---GEVWMWS
   WD 7  312-355    GDRVRSLVDVEGVLSNVRKSINS--FDV----HGSRLVCGGDT---EAVYLVD

   WD40 Template    TG------ECLRTLSGHTSGVTSVSFSP----DGKRLVSGSED---GTIKVWD