Input parameters:

  Query = FBpp0083125 (Len=297)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0083125, Len=297):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MANNARIEHTSSEGHEGDATCVAYFDGQLFSGGADGKIRIWSPELQLLATVNAHEAYIYCMAINQHGKVYSSSCDGQVHF 80  
WD40-rpts          (________________WD 1________________)  (________________WD 2_______________

Query       81 MLPPYGDESVQELFRCDDAIQAMYCDGSVLYTGDDKGVVTTWTNDRMLFKYSLVEEVKSLAGEQNLIYTVRDLDVVVSQV 160 
WD40-rpts      _)    (________________WD 3_______________)          (_________________WD 4_____

Query      161 AEGKSGKYSNKAVIPGKSPLHLLGPMVDGKRSYLAFPDRSGMGLQLVNNLSQQQYSKIWHLPDCHELIINALCGDETYLY 240 
WD40-rpts      ___________)  (____________________WD 5____________________)(_____________WD 6__

Query      241 SGGYDKKVKGWTDLEAGKPKALGEVEVGSCVNSICCGANDTVYIASSDGFIRSAKFV 297 
WD40-rpts      ___________)(___________________WD 7__________________)  

7 WD40-repeats found in QUERY=FBpp0083125 (Len=297):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-42       7.28  415.36  0.00016       27.5%     48.84
  WD 2:  Seg  5    45-82       7.63  429.86  0.00010       22.5%     55.28
  WD 3:  Seg  9    87-123      6.65  389.25  0.00035       20.0%     49.90
  WD 4:  Seg 13   134-172      7.59  428.11  0.00011       15.0%     51.52
  WD 5:  Seg 17   175-220      6.66  389.96  0.00035       25.0%     40.39
  WD 6:  Seg 21   221-252      5.25  331.63  0.00211       20.0%     36.92
  WD 7:  Seg 24   253-295      5.09  325.01  0.00259       20.0%     41.31

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-42     ARIEHTSSE----GH-EGDATCVAYFDGQ-------LFSGGADGKIRIWS
   WD 2   45-82     -LQLLATVN----AH-EAYIYCMAINQHG-----K-VYSSSCDGQVHFML
   WD 3   87-123    -DESVQELF----RC-DDAIQA--MYCDG-----SVLYTGDDKGVVTTWT
   WD 4  134-172    -VEEVKSLA----GE-QNLIYTVRDLDVV-----VSQVAEGKSGKYSNKA
   WD 5  175-220    PGKSPLHLL----GPMVDGKRSYLAFPDRSGMGLQLVNNLSQQQYSKIWH
   WD 6  221-252    ------LPD----CH-ELIINAL--CGDE-----TYLYSGGYDKKVKGWT
   WD 7  253-295    DLEAGKPKALGEVEV-GSCVNSICCGAND-----T-VYIASSDGFIRSAK

   WD40 Template    TGECLRTLS----GH-TSGVTSVSFSPDG-----KRLVSGSEDGTIKVWD