Accession: FBpp0083434 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = FBpp0083434 (Len=510)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0083434, Len=510):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMKMETDKIMDETNSNAQAFTTTMLYDPVRKKDSSPTYQTERELCFQYFTQWSESGQVDFVEHLLSRMCHYQHGQINAYL 80  
WD40-rpts                                                                                      

Query       81 KPMLQRDFITLLPIKGLDHIAENILSYLDAESLKSSELVCKEWLRVISEGMLWKKLIERKVRTDSLWRGLAERRNWMQYL 160 
WD40-rpts                                                                                      

Query      161 FKPRPGQTQRPHSFHRELFPKIMNDIDSIENNWRTGRHMLRRINCRSENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDL 240 
WD40-rpts                                     (____________________WD 1___________________)   (

Query      241 QCVKTLMGHTGSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMTSP 320 
WD40-rpts      ________________WD 2_______________)   (________________WD 3_______________)(___

Query      321 SEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNSIRLWDI 400 
WD40-rpts      ________________WD 4__________________)   (________________WD 5_______________) 

Query      401 ECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCLNTLVEHTGRVFRLQFDEFQIVSSSH 480 
WD40-rpts        (________________WD 6_______________)            (________________WD 7________

Query      481 DDTILIWDFLNFTPNENKTGRTPSPALMEH 510 
WD40-rpts      _______)

7 WD40-repeats found in QUERY=FBpp0083434 (Len=510):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   192-236      6.09  366.40  0.00072       32.5%     42.69
  WD 2:  Seg  6   240-276      8.90  482.49  2.0e-05       42.5%     51.75
  WD 3:  Seg 10   280-316      7.87  439.83  7.3e-05       35.0%     53.38
  WD 4:  Seg 14   317-359      7.57  427.17  0.00011       45.0%     45.45
  WD 5:  Seg 17   363-399      8.43  463.02  3.6e-05       37.5%     51.20
  WD 6:  Seg 21   403-439      8.98  485.42  1.8e-05       55.0%     54.12
  WD 7:  Seg 24   452-488      6.89  399.11  0.00026       42.5%     48.02

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  192-236    NWR-----TGRHMLRRINCRSENSKGVYCL--QYDDGKIVSGLRDNTIKIWD
   WD 2  240-276    -LQ-----C-------VKTLMGHTGSVLCLQY--DDKVIISGSSDSTVRVWD
   WD 3  280-316    -GE-----M-------VNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWD
   WD 4  317-359    MTSPSEITL-------RRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWS
   WD 5  363-399    -CE-----F-------VRTLNGHKRGIACLQY--RDRLVVSGSSDNSIRLWD
   WD 6  403-439    -GA-----C-------LRVLEGHEELVRCIRF--DTKRIVSGAYDGKIKVWD
   WD 7  452-488    -TL-----C-------LNTLVEHTGRVFRLQF--DEFQIVSSSHDDTILIWD

   WD40 Template    TGE-----C-------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD