Input parameters:

  Query = FBpp0083581 (Len=576)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0083581, Len=576):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLGLQSYASSSDEESDHADAATATTNSEPSAPIPDHLLPVDKTHSLSKSIAVCAAPTVVPLGASAVPRTLDPTLKEVTYN 80  
WD40-rpts                                                                                      

Query       81 PRYEEMYAPVKGPEHPDLTMQQRAPRNTLAGYVEKAHINAFEFENQRRTFHTYGYALDPSVDDQADGQSFVGDLQSAYDD 160 
WD40-rpts                                                                                      

Query      161 NGKTVFEPPKAKKLRKQEKNDNPEDIEGFLGPWGKFENEVSVAKPNEQERAELDELLSKRHKRGRIPEDKPLEEKSTLHI 240 
WD40-rpts                                                                       (______________

Query      241 KDAYDYQGRSYLHAPHDLGVNLRSNAPPTKCFLPKAHIHTWSGHNKGISSIRWFPKTAHLLLSGSMDCRVKLWEVYGERR 320 
WD40-rpts      ___WD 1________________)          (_________________WD 2_________________)    (_

Query      321 CIRTFSGHRQAIKDIAWNNRGTNFLSASYDRYIKLWDAETGDVVSRFTTRKMPFCVKFHPDNSKQHLFVAGTSDKKIICW 400 
WD40-rpts      ________________WD 3________________)   (__________________WD 4_________________

Query      401 DTRSGDIVQEYDRHLGSVSTITFVDDNRRFVTTSDDKSMRIWEWDIPVDMKYIADPTMHSMPAVTLAPNGKWMACQSLDN 480 
WD40-rpts      )   (_________________WD 5________________)(___________________WD 6_____________

Query      481 KIVIFSALNRFKMNRKKTFTGHMVSGYACQLDFSPDMSYLVSGDGDGKCYIWDWKTTKMYKKWQAHDGVCISALWHPHEA 560 
WD40-rpts      _____)      (__________________WD 7_________________)   (_________________WD 8__

Query      561 SKVVTAGWDGQIKYWD 576 
WD40-rpts      _______________)

8 WD40-repeats found in QUERY=FBpp0083581 (Len=576):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   226-264      5.96  360.69  0.00086        7.5%     35.65
  WD 2:  Seg  7   275-314      7.69  432.33  9.3e-05       35.0%     50.65
  WD 3:  Seg 11   319-357      9.76  517.70  6.5e-06       35.0%     54.82
  WD 4:  Seg 15   361-401      5.89  358.00  0.00093       27.5%     49.70
  WD 5:  Seg 19   405-443      9.52  507.72  8.9e-06       25.0%     55.94
  WD 6:  Seg 23   444-486      6.74  392.89  0.00032       17.5%     50.87
  WD 7:  Seg 26   493-533      7.33  417.42  0.00015       37.5%     49.17
  WD 8:  Seg 30   537-576      7.28  415.21  0.00016       25.0%     52.35

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  226-264    -I---PEDKPLEEK--STLHIKDAYDY-Q-GRS---YLHAPHDLGVNLRS
   WD 2  275-314    -K---AHIHTWSGH--NKGISSIRWFP-KTAHL---LLSGSMDCRVKLWE
   WD 3  319-357    -R---RCIRTFSGH--RQAIKDIAWNN-R-GTN---FLSASYDRYIKLWD
   WD 4  361-401    -G---DVVSRFTTR--KM-PFCVKFHP-D-NSKQHLFVAGTSDKKIICWD
   WD 5  405-443    -G---DIVQEYDRH--LGSVSTITFVD-D-NRR---FVTTSDDKSMRIWE
   WD 6  444-486    WDIPVDMKYIADPT--MHSMPAVTLAP-N-GKW---MACQSLDNKIVIFS
   WD 7  493-533    -M---NRKKTFTGHMVSGYACQLDFSP-D-MSY---LVSGDGDGKCYIWD
   WD 8  537-576    -T---KMYKKWQAH--DGVCISALWHPHE-ASK---VVTAGWDGQIKYWD

   WD40 Template    TG---ECLRTLSGH--TSGVTSVSFSP-D-GKR---LVSGSEDGTIKVWD