Accession: FBpp0083779 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = FBpp0083779 (Len=743)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0083779, Len=743):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLPSASNHAHAASPVYSNSNNNKSSASSKKTSSKNDLLRCAVGLLLKQKNYVSNERFRRSDFLLLQNKQQFAVNKMLDT 80  
WD40-rpts                                                                                      

Query       81 DLHGGNSFTFSNVQVITNNQHTVDQQFGRFSQFVEAQAEPLRLEMKRFYGPMLCHFYLDLLKAREPRGAVELLRKYAHLV 160 
WD40-rpts                                                                                      

Query      161 APVDMYDAPPPTKINGCSTTANESTFNIRFAKEAQDTGDTELDYFMRLVQTLSGYTRLEAAESDDTVAHFRSSKYELHTT 240 
WD40-rpts                                                                             (________

Query      241 AVVVNRICAYLQRRGHVLIMNLLYTWLHVHIVENEQRAFSEDHLLGLTDDLEGEDGEDDVVSKPAVTLNTRGDIRPSKSL 320 
WD40-rpts      _______________________WD 1_______________________________)        (____________

Query      321 TEKSNRKRPAEEPNIMLETDIKQEVETDESAELSKLQLNIDACLDTLKSATEQILKSQVELPRFLRISERSRGLTSAHLD 400 
WD40-rpts      _____________________WD 2________________________________)_________________WD 3_

Query      401 PSECHMLAGFDNSAVQLWQLNQSYCRGKSFYRRYPQKRCPWELNNCANQEEETDEDSSDEDVKCSEEERRERNRARHCKY 480 
WD40-rpts      __________________)   (___________________WD 4___________________)(_____________

Query      481 ADNSYNEYGGFQLRGHTKGVTDVRFSAHYPLMYSVSKDATMRCWRAHNLHCAAIYRSHNYPIWCLDESPVGQYVVTGSKD 560 
WD40-rpts      ______________WD 5__________________________)   (_________________WD 6__________

Query      561 LSARLWSLEKEHALIIYAGHTQDVECVAFHPNGNYIATGSADHSVRLWCATSGKLMRVFADCRQAVTQLAFSPDGKMLAA 640 
WD40-rpts      ______)   (_________________WD 7________________)   (_________________WD 8______

Query      641 AGEETKVRIFDLAAGAQLAELKDHSASISSLSWSTHNRHLATACSDGTLRLWDIKKLSPMSDNSSAGSSSSATTNRVLTV 720 
WD40-rpts      __________)   (_________________WD 9________________)(_________________WD10_____

Query      721 NSSCQRLVDVFYGTSKTLYCIGT 743 
WD40-rpts      ___________)

10 WD40-repeats found in QUERY=FBpp0083779 (Len=743):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   232-299      2.79  229.83  0.04863       12.5%     10.21
  WD 2:  Seg  5   308-378      3.26  249.48  0.02672        7.5%     27.03
  WD 3:  Seg  8   376-419      7.93  442.06  6.9e-05       17.5%     53.14
  WD 4:  Seg 12   423-466      4.48  299.75  0.00567       10.0%     24.65
  WD 5:  Seg 15   467-525      7.88  440.04  7.3e-05       40.0%     46.37
  WD 6:  Seg 18   529-567      8.87  481.04  2.0e-05       25.0%     50.99
  WD 7:  Seg 22   571-609      9.72  516.18  6.9e-06       32.5%     43.48
  WD 8:  Seg 25   613-651      9.81  519.87  6.1e-06       32.5%     52.97
  WD 9:  Seg 29   655-693      9.96  526.15  5.0e-06       32.5%     50.11
  WD10:  Seg 33   694-732      7.42  421.27  0.00013       20.0%     41.98

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  232-299    SSK-------------------------------Y----EL-------------------HTTAVVVNRICAYLQRRGHVLIMNLLYTWLHVHIV-----ENEQRAFSEDHLLGLTDDLEGEDGEDD
   WD 2  308-378    LNTRGDIRPSKSLTEKSNRKRPAEEPNIMLETDIK----QE-------------------VET--------------D---------ESAELSKL-----QLNIDACL-----DTLKSATEQILKSQ
   WD 3  376-419    KSQ-------------------------------VELPRFL-------------------RIS--------------E---------RSRGLTSA-----HLDPSECH-----MLAGFDNSAVQLWQ
   WD 4  423-466    -SY-------------------------------C----RG-------------------KSF--------------Y---------RRYPQKRCPWELNNCANQEEE-----TDEDSSDEDVKCSE
   WD 5  467-525    EER-------------------------------R----ERNRARHCKYADNSYNEYGGFQLR--------------G---------HTKGVTDV-----RFSAHYPL-----MYSVSKDATMRCWR
   WD 6  529-567    -LH-------------------------------C----AA-------------------IYR--------------S---------HNYPIWCL-----DESPVGQY-----VVTGSKDLSARLWS
   WD 7  571-609    -EH-------------------------------A----LI-------------------IYA--------------G---------HTQDVECV-----AFHPNGNY-----IATGSADHSVRLWC
   WD 8  613-651    -GK-------------------------------L----MR-------------------VFA--------------D---------CRQAVTQL-----AFSPDGKM-----LAAAGEETKVRIFD
   WD 9  655-693    -GA-------------------------------Q----LA-------------------ELK--------------D---------HSASISSL-----SWSTHNRH-----LATACSDGTLRLWD
   WD10  694-732    -IK-------------------------------K----LS-------------------PMS--------------D---------NSSAGSSS-----SATTNRVL-----TVNSSCQRLVDVFY

   WD40 Template    TGE-------------------------------C----LR-------------------TLS--------------G---------HTSGVTSV-----SFSPDGKR-----LVSGSEDGTIKVWD