WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0083988 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0083988 (Len=2232) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0083988, Len=2232): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 METRQPSSGDDLKPELYFLISKFLAAGPLEETAKVLIRELEEKKVLPRRLDWQGNEHEQTFEELERKYKHIGANHLLEIC 80
WD40-rpts
Query 81 SRLGPLVDRELPPSVPGINSLLGTGRQNLLRTKETVYCHRSLRDYCTRLNGVSLPDSVLTKPTHNLDRVLTGREHGGEVR 160
WD40-rpts
Query 161 RKLLVPTDLYRRTKLLRRTVGHLSSVYCVLFDRTGRYIITGADDLLIKIWSAADGRLLATLRGASSEITDIAINLDNTML 240
WD40-rpts (_________________WD 1________________) (_________________WD 2____
Query 241 AAGSLDHILRVWDMQTTSPIAVLSAHTGMITSVNFCPSPRSDLKYLVTTSTDGSIAFWQYSTPRGQKITFAPKPTQYHEK 320
WD40-rpts ____________) (___________________WD 3__________________) (_____
Query 321 LRPGQAQMMCTTFSPGGIFLAAGSADHHVRVYMMGEDGPKRILETEAYTDAVDSVQWSHRGLRFISGSKDGTAHIWTFES 400
WD40-rpts ____________WD 4________________)(___________________WD 5___________________)
Query 401 QQWKSSKLCMTERLASCPEPEEGKRLKVTMVAWDASDRYVITAVNDFTIKIWDSKSAKLHRVLRGHKDELYVLESNPRDE 480
WD40-rpts (_________________WD 6________________) (_________________WD 7__
Query 481 HVLLSAGHDGQVFLWDIEQGVCVANFLNDIDGQGHGSVFDAKWSPDGTMIAATDSHGHILIFGLGVCIEKYKMLPTELFF 560
WD40-rpts _______________) (_________________WD 8________________)
Query 561 HTDFRPLLRDAQHHVVDEQTQIMPHLMPPPFLVDADGNPHPSRFQRFVPGRESCSLDQLIPNLTVGVDGVVIDDGGAGGD 640
WD40-rpts
Query 641 AVVAAAPAEAPPAALPPAAAGGPQGANYSHIDRMIAALANRQSVNVNANDANPTNGNQSFERLTNRQMPDSNGRQSSRGN 720
WD40-rpts
Query 721 VLGSRLSTPRQGWGAAAAAPVEDQAGPSQPPAEPAAEPGQAQVQQALPLKFIRRTYVRPMKYPQLQNLKQTIYSAGQFEK 800
WD40-rpts
Query 801 QEYKREMRRRPIMINTASAASSQQPGSVGRPRNTRGNGGGARAGRRRGPQPAGGQPQPAYRTRAVRDQEPEHYDEVAPPP 880
WD40-rpts
Query 881 EEEEEDVSSNSSGDTSYSNVEENLEDSSDESETDSSDYSDWVADTPGPNLEPPKRSKRKPLSRRPRSSDDSSDDERAGRS 960
WD40-rpts
Query 961 RGGQVTARKVGRKTVLFPPTDANGEIPELYRPAEWLSEVIPRKAPYYPQMGDEVVYFRQGHAKYLDAVRLKKVYKLSHSS 1040
WD40-rpts
Query 1041 EPWNFHTLRDHELVRVIGIKYEIRPPRLCCLKLAIIDEEGNMTGTTFKIKYHDMPDVLDFLVLRQTFDLAVQRNWSIGDR 1120
WD40-rpts
Query 1121 FRCMIVDGWWMGQIESRHALSADFPDSSFMCFRVRWDNGEYEFMSPWDMEPIDQQRVPDEVGGAVPVLPEEIRATLYQPK 1200
WD40-rpts
Query 1201 SEEWHRGDRDGTCRRIINGLEQVMRLSIAEHFLAPVDLNIYPDYAYLIEYPIDLTTIKSRFENHFYRRITSAQFDVRYLA 1280
WD40-rpts
Query 1281 TNAEQYNRRHAIIVKHSRIVTDLCLRIIREPDEIDVAAVYHQLADVYHSSESENEVDSDVVPSTSTGPTTSAAAAAARQR 1360
WD40-rpts
Query 1361 VSSARRSTRIHSEGDWRADCRQLLDLMWARTDSAPFREPVDTIDFPDYLEIIATPMDLRTVKEDLLGGNYDDPLDFAKDV 1440
WD40-rpts
Query 1441 RLIFQNSKNYNTNKRSRIYAMTLRLSALFESHIKTVVTSWKAALRRANKNKSGSSGGGRGGSSSSPNKRVKKERSTRRNQ 1520
WD40-rpts
Query 1521 KPTAAARRLPVANSSEDEDEEDDDDDDDDDDEEEASTRGRSRRRNGVAVSASSSGSNRVTSSSAAQQRRGKSSSSEEEEE 1600
WD40-rpts
Query 1601 EETSAQATSDASSDEEERAQSNDSSPQQTRTRRARQRQRLSDDSNINDSEDSYNPNEGRGSRRRPGAARPSSNRQTNGHS 1680
WD40-rpts
Query 1681 SKRRRLNKSPANAAPGPSLPRRTRRIAGSSAEEAASHSQHDESTQDSQIGRRKGRSASSRSIGNGPSTSAAAAANSSLES 1760
WD40-rpts
Query 1761 PSRNTRANGTRTSSHLGAENDHSYHLPVRNGRIIESDTDSPVIRPTRQSAKRALMDWGRGSDIEEEEEEEEEDSEEAEEI 1840
WD40-rpts
Query 1841 LPTPTKDDLPSTSRAALAQAAAGPSRQLRTNRNTVVRPAQSDDDDDDDSDNEPLANNQQKNYQSPAKSSSTATVAPHPLS 1920
WD40-rpts
Query 1921 LRRRLASPPERNTHMTRSHATSTTSSAAASRAEQQPAVSTHDHNYLGNVNSSRAPRRILSRHQRNADELDTSLDVLENSR 2000
WD40-rpts
Query 2001 LLSAIANHRRPTSTTNSNSASNVVTRRLRGRASQANSHDEDHEEEEAAASDEGTDGGSSSQSYEDEDEDSDSEDNQPLTS 2080
WD40-rpts
Query 2081 YVSPSNGRPRRKAKTSSSSATTQERPLRRTRRPPSNNSIANDNDDDDDYVVPRSRRANRGGNQRAGRNQKRPRYNEQSEE 2160
WD40-rpts
Query 2161 EEAAAGYSHRSKRIRNGDAHASSQERSQASTERDQEEEEDGTSVDSEEQQVNVSSRGRVRKPSAKARGIFKE 2232
WD40-rpts
 8 WD40-repeats found in QUERY=FBpp0083988 (Len=2232): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 173-211 8.23 454.79 4.6e-05 35.0% 51.42 WD 2: Seg 8 215-253 9.17 493.34 1.4e-05 37.5% 51.59 WD 3: Seg 12 257-299 8.02 446.03 6.1e-05 45.0% 50.74 WD 4: Seg 16 315-353 5.70 350.19 0.00119 25.0% 44.90 WD 5: Seg 19 354-397 8.82 478.81 2.2e-05 40.0% 53.67 WD 6: Seg 23 415-453 5.77 352.83 0.00109 27.5% 42.13 WD 7: Seg 26 457-496 7.42 421.08 0.00013 30.0% 51.58 WD 8: Seg 31 505-543 5.22 330.38 0.00219 22.5% 37.86Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 173-211 -TK----LLRRTVGHLSSVYCVLFDR----TGRYIITGADDLLIKIWS WD 2 215-253 -GR----LLATLRGASSEITDIAINL----DNTMLAAGSLDHILRVWD WD 3 257-299 -TS----PIAVLSAHTGMITSVNFCPSPRSDLKYLVTTSTDGSIAFWQ WD 4 315-353 -TQ----YHEKLRPGQAQMMCTTFSP----GGIFLAAGSADHHVRVYM WD 5 354-397 MGEDGPKRILETEAYTDAVDSVQWSH----RGLRFISGSKDGTAHIWT WD 6 415-453 -AS----CPEPEEGKRLKVTMVAWDA----SDRYVITAVNDFTIKIWD WD 7 457-496 -AK----LHRVLRGHKDELYVLESNP---RDEHVLLSAGHDGQVFLWD WD 8 505-543 NFL----NDIDGQGH-GSVFDAKWSP----DGTMIAATDSHGHILIFG WD40 Template TGE----CLRTLSGHTSGVTSVSFSP----DGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |